Detailed information of component protein


Summary

Component ID T6CP013385
Component protein type TssD
T6SS ID (Type) T6SS01032 insolico (Type i4b)
Strain Acinetobacter baumannii AB307-0294
Replicon chromosome
Sequence Protein sequence (168 a.a.); Nucleotide sequence (504 bp)
Reference
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insolico Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene) ABBFA_RS11215
Coordinate (Strand) 2382521..2383024 (-)
NCBI ID WP_000653195.1
RefSeq NZ_CP001172
Uniprot ID A0A0R1C1Y7_ACINO, A0A7U4F766_ACIBA, A0A009RJK0_9GAMM, A0A010KAB5_9GAMM, A0A022IZT8_9GAMM, A0A013UTK5_9GAMM, A0A013TMC1_9GAMM, A0A0E1PSF3_ACIBA, A0A0J0ZX19_ACIBA, N8S3X6_9GAMM, A0A1V2V3D7_9GAMM, A0A4R6CNR4_9GAMM, A0A3R9CCF9_9GAMM, A0A3R9GB64_9GAMM, A0A7U3XZ91_ACIBC, R9RIP4_ACIBA, A0A1A0GM72_ACICA, A0A7U3Y5A8_ACIB5, A0A143IYH8_ACIPI, A0A654KYA4_ACIBM, B0VB03_ACIBY, A0A5K6CS27_ACIB3, D0C8P3_ACIB2, F0KJP8_ACICP, L9MI81_9GAMM, A0A385EU73_ACIBA
KEGG ID abz:ABZJ_01456, abau:IX87_03965, abk:LX00_06415, abw:BL01_13265, acc:BDGL_000641, aby:ABAYE2413
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_HCP PF05638.14 5.4e-40 5..139

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -



  Protein sequence: 168 a.a.    

>T6CP013385 NZ_CP001172:c2383024-2382521 [Acinetobacter baumannii AB307-0294] [TssD]
MKDIYVEFRGKYKVDGESRDSEHKGWLEVNSWSHNIRQPKSATSSSVGGHTAERVEHSDMVFVKDLDATSPKLWEACSAG
YTFDEVQIDFYRANGDKRIKYLQIKLKHVLVSSVTPTVNEEGVPTEAFGLKYAAVEWTYNQQDINGTAKGAVTKKWSLSN
NTASYAA*

  Nucleotide sequence: 504 bp    

>T6CP013385 NZ_CP001172:c2383024-2382521 [Acinetobacter baumannii AB307-0294] [TssD]
ATGAAAGATATATACGTTGAGTTTCGCGGTAAATATAAAGTTGATGGAGAGTCTCGTGATTCTGAGCACAAAGGTTGGTT
AGAAGTTAACTCTTGGTCTCATAACATCCGTCAACCTAAATCTGCTACTTCAAGTAGTGTGGGCGGCCACACTGCTGAAC
GTGTTGAACATTCTGACATGGTTTTCGTGAAAGACTTAGACGCAACTAGCCCTAAATTATGGGAAGCTTGTTCAGCTGGT
TATACATTTGATGAAGTACAAATCGACTTCTATCGCGCAAATGGCGATAAACGTATCAAGTACTTACAAATCAAATTGAA
GCACGTTTTAGTTTCTAGTGTGACTCCAACTGTTAACGAAGAAGGCGTTCCTACAGAAGCATTCGGTTTGAAATATGCTG
CTGTTGAGTGGACTTATAACCAACAAGATATTAACGGTACTGCTAAAGGTGCTGTTACTAAGAAATGGTCACTTTCTAAT
AATACAGCTTCTTACGCAGCGTAA