Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS00487  |
| T6SS type | Type Unknown |
| Strain | Vibrio cholerae O395 |
| Replicon (RefSeq) | chromosome II (NC_012583) |
| Location | 117425..140648 |
| Function | - |
| Comment | - |
| References | - |
Bioinformatics investigation has been performed.T6SS components and genome coordinates
| Component | FHA | PAAR | TssA | TssC | TssE | TssF | TssG | TssH | TssI | TssJ | TssL | VasH |
| Number | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| VC395_RS14710 | 112722..114401 | - | 1680 | WP_001275247.1 | RluA family pseudouridine synthase | ||
| T6CP011918 | PAAR | VC395_RS14715 | 115173..115457 | + | 285 | WP_000526403.1 | type VI secretion system PAAR protein |
| VC395_RS14720 | 115525..116445 | + | 921 | WP_001901866.1 | sel1 repeat family protein | ||
| VC395_RS14725 (tssB) | 116877..117384 | + | 508 | pseudogene | type VI secretion system contractile sheath small subunit | ||
| T6CP005233 | TssC | VC395_RS14730 (tssC) | 117428..118903 | + | 1476 | WP_000108140.1 | type VI secretion system contractile sheath large subunit |
| T6CP008780 | TssE | VC395_RS14735 (tssE) | 118906..119331 | + | 426 | WP_000220998.1 | type VI secretion system baseplate subunit TssE |
| T6CP005234 | TssF | VC395_RS14740 (tssF) | 119337..121106 | + | 1770 | WP_000189792.1 | type VI secretion system baseplate subunit TssF |
| T6CP005235 | TssG | VC395_RS14745 (tssG) | 121070..122086 | + | 1017 | WP_000510174.1 | type VI secretion system baseplate subunit TssG |
| T6CP011917 | FHA | VC395_RS14750 (tagH) | 122089..123576 | + | 1488 | WP_001089706.1 | type VI secretion system-associated FHA domain protein TagH |
| T6CP005236 | TssJ | VC395_RS14755 (tssJ) | 123579..124055 | + | 477 | WP_001045311.1 | type VI secretion system lipoprotein TssJ |
| VC395_RS14760 (tssK) | 124062..125398 | + | 1337 | pseudogene | type VI secretion system baseplate subunit TssK | ||
| T6CP005237 | TssL | VC395_RS14765 | 125401..126174 | + | 774 | WP_000083409.1 | type IVB secretion system protein IcmH/DotU |
| T6CP005238 | TssH | VC395_RS14770 (tssH) | 126200..128809 | + | 2610 | WP_000619136.1 | type VI secretion system ATPase TssH |
| T6CP012517 | VasH | VC395_RS14775 (vasH) | 128812..130404 | + | 1593 | WP_000084793.1 | sigma-54 dependent T6SS transcriptional regulator VasH |
| VC395_RS14780 (tagO) | 130401..131057 | + | 657 | WP_001223389.1 | type VI secretion system-associated protein TagO | ||
| T6CP008781 | TssA | VC395_RS14785 (vasJ) | 131067..132476 | + | 1410 | WP_000426093.1 | TssA family type VI secretion system protein VasJ |
| VC395_RS14795 (tssM) | 132537..136029 | + | 3493 | pseudogene | type VI secretion system membrane subunit TssM | ||
| T6CP008782 | TssA | VC395_RS14800 | 136080..137342 | + | 1263 | WP_000073077.1 | ImpA family type VI secretion system protein |
| T6CP005239 | TssI | VC395_RS14810 (tssI) | 137595..140648 | + | 3054 | WP_000113294.1 | type VI secretion system tip protein VgrG |
| VC395_RS14815 | 140645..141013 | + | 369 | WP_001061295.1 | hypothetical protein | ||
| VC395_RS14820 | 141161..141421 | - | 261 | WP_000799238.1 | DUF3012 domain-containing protein | ||
| VC395_RS14830 (rbsD) | 141705..142124 | + | 420 | WP_001911632.1 | D-ribose pyranase | ||
| VC395_RS14835 (rbsA) | 142151..143653 | + | 1503 | WP_000189455.1 | ribose ABC transporter ATP-binding protein RbsA | ||
| VC395_RS14840 (rbsC) | 143683..144651 | + | 969 | WP_001997313.1 | ribose ABC transporter permease | ||
| VC395_RS14845 (rbsB) | 144712..145590 | + | 879 | WP_000737186.1 | ribose ABC transporter substrate-binding protein RbsB |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|---|---|---|---|---|---|---|---|
| REG0180 |
VC0395_RS17530 (TsrA) | protein | Global regulator | Vibrio cholerae O395 | chromosome (NC_009457) | 2598392..2598676 (-) | 445982516 | T6SS Transciption (↑) |
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
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Experimental investigation has been performed.| Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
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