Detailed information of component protein


Summary

Component ID T6CP005238
Component protein type TssH
T6SS ID (Type) T6SS00487 insolico (Type Unknown)
Strain Vibrio cholerae O395
Replicon chromosome II
Sequence Protein sequence (870 a.a.); Nucleotide sequence (2610 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) VC395_RS14770
Coordinate (Strand) 126200..128809 (+)
NCBI ID WP_000619136.1
RefSeq NC_012583
Uniprot ID Q9KN49_VIBCH, A0A0X1L1W3_VIBCO, A0A0H3AFC6_VIBC3, A0A0K9UV37_VIBCL, A0A7U8WPW7_VIBCL, A0A0H3Q395_VIBCL, C3LUE0_VIBCM, A0A0H5Z4R9_VIBCL
KEGG ID vcm:VCM66_A0114, vcq:EN18_04305, vch:VCA0116, vco:VC0395_0021
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 2.6e-37 607..768
AAA_lid_9 PF17871.3 1.2e-28 361..452
ClpB_D2-small PF10431.11 3.6e-11 774..848
AAA PF00004.31 8.7e-10 221..351
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 870 a.a.    

>T6CP005238 NC_012583:126200-128809 [Vibrio cholerae O395] [TssH]
VIRIELPTLIAKLNAQSKLALEQAASLCIERQHPEVTLEYYLDVLLDNPLSDVRLVLKQAGLEVDQVKQAIASTYSREQV
LDTYPAFSPLLVELLQEAWLLSSTELEQAELRSGAIFLAALTRADRYLSFKLISLFEGINRENLKKHFAMILSDSAETAV
AKTDKNAANPLQAAAETPLGRFCTNVTEQARNGELDPVLSRENELNLMVDILCRRRKNNPIVVGEAGVGKSAMIEGLALR
VVAGKVPTQLQNVELYSLDLGRLQAGASVKGEFEKRLKGVIDAIKQSPKPIILFIDEAHTLIGSGNQEGGSDAANLLKPA
LARGELSTVAATTWKEYKKYFEKDPALTRRFQLVKLDEPTIDQAVDILRGLNSVYEKAHNVLITDDALKAAAELSARYIS
GRQLPDKAIDVLDTACARIAINMTTPPKRLALLETLCHQRQLEIDMLERAQFLGQEVDSERLDVLRNQELADEAEKAALT
QSWQQQKSLVESIIALRAELMELSQAQEQDPDHLLVVRTALQEQYQALDAIDHAERLMHPQVDADQIAEVIADWTGVPVD
QMNTDELHKITHLTSILGQAIKGQETAIERIHRHLLTARADLRRPGRPKGAFLLVGPSGVGKTETVVQLAEQLYGGKQFL
TTINMSEYQEKHTVSRLIGSPPGYVGYGEGGVLTEAIRKMPYSVVLLDEVEKAHPEVLNIFYQGFDKGEIADGEGRVIDC
QNIVFFLTSNLGYQTIVDYADEPAKLDEALYPELAAFFKPALLARMEVIPYLPLGKEVLAQIVRGKLARLEKLFKTRYNA
EVVIEESLIDEILSRATRSENGARMLEAIIEGQLLPPVSLALLNKLAERAPVERIRLAAEAGEFIGEVA*

  Nucleotide sequence: 2610 bp    

>T6CP005238 NC_012583:126200-128809 [Vibrio cholerae O395] [TssH]
GTGATCCGTATTGAATTACCCACTCTTATTGCAAAACTGAATGCACAAAGCAAATTGGCTCTGGAGCAAGCTGCCTCTCT
CTGTATTGAGCGCCAACACCCTGAAGTCACTCTAGAATATTATCTGGATGTGTTACTGGATAATCCCCTCTCTGATGTGC
GTCTCGTACTCAAGCAAGCGGGGCTGGAAGTCGATCAGGTGAAACAGGCCATCGCATCAACCTATAGCCGTGAACAGGTC
TTGGATACCTATCCAGCGTTTTCGCCACTGCTGGTCGAGTTACTGCAAGAAGCTTGGCTGCTTTCCAGTACCGAGTTAGA
GCAGGCTGAGCTGCGTTCAGGGGCGATTTTCTTAGCCGCGCTGACCCGTGCGGACCGTTATCTGTCATTCAAATTGATCA
GTTTGTTTGAAGGCATCAACCGCGAAAACCTCAAAAAACACTTTGCGATGATCTTAAGTGATTCTGCAGAAACCGCAGTG
GCTAAAACAGACAAAAATGCGGCCAATCCACTGCAAGCCGCCGCAGAAACACCACTCGGACGCTTTTGCACGAATGTGAC
TGAGCAAGCCCGTAACGGTGAGCTTGATCCTGTCCTGAGCCGTGAAAATGAACTCAACTTGATGGTGGATATTCTGTGCC
GTCGCCGCAAAAACAACCCGATTGTGGTGGGTGAAGCAGGTGTTGGTAAAAGTGCCATGATTGAAGGTTTGGCGCTGCGT
GTGGTGGCTGGCAAAGTGCCCACCCAACTGCAAAATGTAGAACTCTATTCGTTGGATCTTGGTCGCTTGCAAGCGGGTGC
ATCGGTGAAAGGCGAGTTCGAAAAGCGCCTAAAAGGGGTGATTGATGCGATTAAGCAATCGCCTAAACCGATCATTTTAT
TCATCGATGAAGCGCACACCTTAATTGGTTCTGGTAACCAAGAAGGGGGCAGTGATGCGGCAAACTTGCTCAAGCCTGCG
CTGGCGCGTGGTGAGTTAAGCACAGTGGCGGCGACGACGTGGAAAGAGTACAAAAAGTATTTTGAAAAAGATCCCGCGCT
GACGCGCCGTTTCCAACTGGTCAAACTCGATGAACCAACGATCGATCAAGCCGTCGATATTCTGCGCGGTCTTAACAGTG
TCTATGAAAAGGCACACAACGTACTGATCACTGATGATGCACTAAAAGCTGCCGCTGAACTGTCAGCGCGTTACATCTCA
GGTCGTCAACTGCCCGATAAAGCGATTGATGTGCTGGATACCGCTTGTGCGCGGATTGCGATCAATATGACCACGCCACC
TAAGCGTTTAGCGCTACTTGAAACCTTGTGCCATCAGCGTCAACTCGAAATTGACATGCTAGAGCGGGCGCAATTCCTTG
GCCAAGAGGTCGATAGCGAGCGCCTCGATGTTTTGCGTAATCAAGAGTTGGCCGATGAAGCGGAAAAAGCCGCGTTGACA
CAGAGTTGGCAGCAGCAAAAAAGCTTGGTGGAGTCGATCATCGCACTGCGTGCTGAGCTGATGGAGTTAAGCCAAGCGCA
AGAGCAAGATCCCGACCATTTATTGGTGGTGCGTACGGCGCTGCAAGAGCAGTATCAAGCACTCGATGCGATTGATCATG
CTGAGCGCTTGATGCACCCGCAAGTCGATGCGGATCAGATTGCTGAAGTGATCGCCGATTGGACGGGCGTGCCTGTTGAT
CAGATGAACACCGATGAGCTGCATAAAATCACCCATTTGACCTCGATTTTAGGCCAAGCGATCAAAGGCCAAGAAACGGC
CATCGAACGTATCCATCGTCACTTACTGACAGCGCGTGCCGATCTGCGTCGTCCGGGACGTCCGAAAGGGGCATTCCTGC
TGGTGGGGCCAAGCGGTGTAGGTAAAACCGAAACGGTAGTGCAACTGGCAGAGCAGCTTTACGGTGGTAAACAGTTCCTC
ACCACCATCAACATGTCGGAATACCAAGAGAAACACACCGTTTCCCGCCTGATTGGTTCACCTCCGGGTTATGTTGGCTA
CGGTGAAGGCGGTGTGCTGACGGAGGCTATCCGTAAGATGCCTTATTCGGTGGTTCTGCTTGATGAAGTCGAAAAAGCCC
ATCCAGAAGTTTTAAATATCTTCTACCAAGGCTTTGATAAAGGCGAAATCGCCGATGGTGAAGGTCGTGTCATCGACTGC
CAAAACATCGTGTTCTTCCTGACATCGAACTTAGGCTACCAAACCATAGTCGATTATGCCGATGAGCCCGCCAAGCTTGA
TGAAGCGCTTTATCCTGAATTGGCCGCTTTCTTTAAACCTGCTCTGCTGGCGCGTATGGAAGTGATCCCTTACCTACCAC
TGGGTAAAGAAGTGTTGGCACAGATTGTTCGCGGCAAGCTGGCTCGTCTCGAGAAACTGTTCAAGACACGTTACAACGCA
GAAGTGGTGATTGAAGAGAGCTTAATTGACGAAATCTTAAGCCGTGCGACACGCAGCGAAAACGGTGCGCGTATGCTGGA
GGCGATCATTGAAGGGCAATTGCTGCCGCCCGTTTCATTGGCGCTGCTGAATAAACTCGCCGAGAGAGCGCCCGTTGAGC
GCATTCGTTTAGCGGCAGAAGCGGGTGAATTTATCGGAGAGGTAGCGTAA