Detailed information of component protein
Summary
| Component ID | T6CP011917 |
| Component protein type | FHA |
| T6SS ID (Type) | T6SS00487  (Type Unknown) |
| Strain | Vibrio cholerae O395 |
| Replicon | chromosome II |
| Sequence | Protein sequence (496 a.a.); Nucleotide sequence (1488 bp) |
| Reference | - |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | VC395_RS14750 |
| Coordinate (Strand) | 122089..123576 (+) |
| NCBI ID | WP_001089706.1 |
| RefSeq | NC_012583 |
| Uniprot ID | A0A0H3AG71_VIBC3, A0A023PRJ4_VIBCL |
| KEGG ID | vco:VC0395_0026 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| FHA | PF00498.28 | 2.8e-05 | 35..102 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| - | - |
Protein sequence: 496 a.a.
>T6CP011917 NC_012583:122089-123576 [Vibrio cholerae O395] [FHA]
MNSVTLPSLTLLVTNAQHLESGLSAQHTWTSSGGVIGSSPNAQWRLVDAQGSVKPMHCEVMMVDGAYCLKDSCGSTYVNG
ADMPLGVGQMARLTHKDEVSVGPYRLRVLFGNAIEVEEQYGSLDALFASKDEDLLADLTLDIEPEKHELPTNTDPLQALD
NLMGAAGSSTSLLDDPKSEQPLSAQPSLVPQDNLVLQNADFTPQADSEYEMTSSIRLKKILGFAKATFAKQTKSEAPNVT
SATPTISQYKTSESNVSEGFTMDEKVLDLLEEEVAKSFQPQLEKSAYSTMHTSSTSQANHLVTGPILEGLGVDLSDENDM
NRMHLLSQELGESLQACVRGLLDLHQQVSESRFGTLNRNLQPIEDNPLRLGLSYEKTIRTLYDADKSVVHLSAPAAIAES
LKTVRDHNEAMQFATSEALSQILNAFSPQVMLRRFHHYKRNSDTTQTSTDAWAWNMYCSYYQELTSNRQRGFEKLFWEIF
EQAYDRKIREKQLEL*
MNSVTLPSLTLLVTNAQHLESGLSAQHTWTSSGGVIGSSPNAQWRLVDAQGSVKPMHCEVMMVDGAYCLKDSCGSTYVNG
ADMPLGVGQMARLTHKDEVSVGPYRLRVLFGNAIEVEEQYGSLDALFASKDEDLLADLTLDIEPEKHELPTNTDPLQALD
NLMGAAGSSTSLLDDPKSEQPLSAQPSLVPQDNLVLQNADFTPQADSEYEMTSSIRLKKILGFAKATFAKQTKSEAPNVT
SATPTISQYKTSESNVSEGFTMDEKVLDLLEEEVAKSFQPQLEKSAYSTMHTSSTSQANHLVTGPILEGLGVDLSDENDM
NRMHLLSQELGESLQACVRGLLDLHQQVSESRFGTLNRNLQPIEDNPLRLGLSYEKTIRTLYDADKSVVHLSAPAAIAES
LKTVRDHNEAMQFATSEALSQILNAFSPQVMLRRFHHYKRNSDTTQTSTDAWAWNMYCSYYQELTSNRQRGFEKLFWEIF
EQAYDRKIREKQLEL*
Nucleotide sequence: 1488 bp
>T6CP011917 NC_012583:122089-123576 [Vibrio cholerae O395] [FHA]
ATGAACTCAGTGACATTACCTTCGTTGACCCTATTAGTCACCAATGCTCAGCACTTAGAGTCTGGCTTGTCCGCTCAGCA
TACGTGGACCTCGTCAGGTGGGGTGATCGGCTCATCGCCGAATGCGCAGTGGCGTTTGGTCGATGCGCAAGGCAGTGTAA
AACCCATGCACTGTGAAGTGATGATGGTAGACGGGGCGTATTGTTTAAAAGACAGCTGCGGCAGCACGTATGTCAACGGG
GCAGACATGCCACTGGGCGTTGGGCAAATGGCACGTCTGACTCACAAAGATGAAGTGAGTGTGGGGCCTTACCGTTTGCG
AGTGCTGTTTGGTAACGCCATCGAAGTGGAAGAACAATATGGATCTTTAGATGCGCTGTTTGCCTCTAAGGATGAGGATC
TGCTAGCGGATTTGACGCTCGACATCGAACCAGAAAAACACGAATTACCAACCAATACAGACCCATTACAGGCGCTCGAT
AACCTGATGGGTGCGGCGGGCAGTTCGACCTCCTTACTGGATGATCCTAAAAGTGAGCAGCCGTTATCCGCCCAACCTAG
CCTCGTGCCACAAGATAACTTAGTGCTGCAAAATGCCGATTTTACGCCACAAGCGGACAGTGAGTATGAGATGACCTCAT
CGATCCGCCTTAAGAAAATTCTTGGTTTTGCGAAGGCCACCTTTGCTAAGCAAACCAAATCAGAAGCACCGAACGTGACT
TCTGCCACCCCCACAATTTCTCAATATAAAACCAGCGAAAGCAACGTATCAGAGGGCTTCACAATGGATGAAAAAGTACT
GGATTTGTTAGAAGAGGAAGTCGCGAAAAGTTTCCAACCGCAGTTGGAGAAAAGCGCGTATTCCACTATGCACACAAGCT
CAACCAGCCAAGCTAACCACTTGGTGACAGGTCCGATCTTGGAAGGGCTCGGCGTAGACCTGAGTGATGAAAATGATATG
AATCGTATGCATCTTTTATCGCAAGAGCTGGGTGAGTCTTTGCAAGCTTGTGTGCGCGGTTTACTCGATTTGCATCAACA
AGTGAGTGAAAGCCGTTTCGGTACTTTGAACCGTAATCTGCAACCCATTGAAGATAACCCGCTGCGTTTAGGCCTCTCCT
ATGAAAAGACGATCCGCACTCTGTACGATGCTGATAAGAGCGTCGTGCACCTTTCTGCCCCTGCGGCGATTGCTGAAAGC
CTAAAAACCGTTCGCGATCATAATGAAGCGATGCAGTTCGCCACGTCAGAAGCCTTGAGCCAAATTCTCAACGCTTTCTC
ACCACAGGTGATGCTGCGCCGTTTCCACCACTACAAGCGCAATTCTGATACCACACAAACTTCCACGGATGCTTGGGCGT
GGAATATGTACTGCAGCTACTACCAAGAGCTGACCTCTAACCGCCAACGCGGCTTTGAGAAGTTGTTTTGGGAGATCTTT
GAGCAAGCCTACGATCGCAAAATTCGCGAGAAGCAACTGGAGCTATAA
ATGAACTCAGTGACATTACCTTCGTTGACCCTATTAGTCACCAATGCTCAGCACTTAGAGTCTGGCTTGTCCGCTCAGCA
TACGTGGACCTCGTCAGGTGGGGTGATCGGCTCATCGCCGAATGCGCAGTGGCGTTTGGTCGATGCGCAAGGCAGTGTAA
AACCCATGCACTGTGAAGTGATGATGGTAGACGGGGCGTATTGTTTAAAAGACAGCTGCGGCAGCACGTATGTCAACGGG
GCAGACATGCCACTGGGCGTTGGGCAAATGGCACGTCTGACTCACAAAGATGAAGTGAGTGTGGGGCCTTACCGTTTGCG
AGTGCTGTTTGGTAACGCCATCGAAGTGGAAGAACAATATGGATCTTTAGATGCGCTGTTTGCCTCTAAGGATGAGGATC
TGCTAGCGGATTTGACGCTCGACATCGAACCAGAAAAACACGAATTACCAACCAATACAGACCCATTACAGGCGCTCGAT
AACCTGATGGGTGCGGCGGGCAGTTCGACCTCCTTACTGGATGATCCTAAAAGTGAGCAGCCGTTATCCGCCCAACCTAG
CCTCGTGCCACAAGATAACTTAGTGCTGCAAAATGCCGATTTTACGCCACAAGCGGACAGTGAGTATGAGATGACCTCAT
CGATCCGCCTTAAGAAAATTCTTGGTTTTGCGAAGGCCACCTTTGCTAAGCAAACCAAATCAGAAGCACCGAACGTGACT
TCTGCCACCCCCACAATTTCTCAATATAAAACCAGCGAAAGCAACGTATCAGAGGGCTTCACAATGGATGAAAAAGTACT
GGATTTGTTAGAAGAGGAAGTCGCGAAAAGTTTCCAACCGCAGTTGGAGAAAAGCGCGTATTCCACTATGCACACAAGCT
CAACCAGCCAAGCTAACCACTTGGTGACAGGTCCGATCTTGGAAGGGCTCGGCGTAGACCTGAGTGATGAAAATGATATG
AATCGTATGCATCTTTTATCGCAAGAGCTGGGTGAGTCTTTGCAAGCTTGTGTGCGCGGTTTACTCGATTTGCATCAACA
AGTGAGTGAAAGCCGTTTCGGTACTTTGAACCGTAATCTGCAACCCATTGAAGATAACCCGCTGCGTTTAGGCCTCTCCT
ATGAAAAGACGATCCGCACTCTGTACGATGCTGATAAGAGCGTCGTGCACCTTTCTGCCCCTGCGGCGATTGCTGAAAGC
CTAAAAACCGTTCGCGATCATAATGAAGCGATGCAGTTCGCCACGTCAGAAGCCTTGAGCCAAATTCTCAACGCTTTCTC
ACCACAGGTGATGCTGCGCCGTTTCCACCACTACAAGCGCAATTCTGATACCACACAAACTTCCACGGATGCTTGGGCGT
GGAATATGTACTGCAGCTACTACCAAGAGCTGACCTCTAACCGCCAACGCGGCTTTGAGAAGTTGTTTTGGGAGATCTTT
GAGCAAGCCTACGATCGCAAAATTCGCGAGAAGCAACTGGAGCTATAA