Detailed information of component protein


Summary

Component ID T6CP005233
Component protein type TssC
T6SS ID (Type) T6SS00487 insolico (Type Unknown)
Strain Vibrio cholerae O395
Replicon chromosome II
Sequence Protein sequence (492 a.a.); Nucleotide sequence (1476 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) VC395_RS14730
Coordinate (Strand) 117428..118903 (+)
NCBI ID WP_000108140.1
RefSeq NC_012583
Uniprot ID A0A085SGI6_VIBCL
KEGG ID vcq:EN18_04265
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 8.6e-127 65..364
VipB_2 PF18945.2 1.8e-45 377..488
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 492 a.a.    

>T6CP005233 NC_012583:117428-118903 [Vibrio cholerae O395] [TssC]
MSTTEKVLERPQLAQGSLLDEIMAQTRIAPSEEGYDIAKKGVAAFIENLMGSQHSAEPVNKSLVDQMLVELDKKISAQMD
EILHNSQFQAMESAWRGLKLFVDRTDFRENNKVEILHVTKDELLEDFEFAPETAQSGLYKHVYSAGYGQFGGEPVGAIIG
NYAFTPSTPDMKLLQYMGALGAMAHAPFISSVGPEFFGIDSFEELPNIKDLKSTFESPKYTKWRSLRESEDARYLGLTAP
RFLLRVPYDPIENPVKSFNYAENVSASHEHYLWGNTAFAFATRLTDSFAKYRWCPNIIGPQSGGAVEDLPVHVFESMGAL
QSKIPTEVLITDRKEFELAEEGFIALTMRKGSDNAAFFSANSIQKPKVFPNTKEGKEAETNYKLGTQLPYMMIINRLAHY
VKVLQREQIGAWKERQDLERELNSWIKQYVADQENPPADVRSRRPLRAARIEVMDVEGNPGWYQVSLSVRPHFKYMGANF
ELSLVGRLDQA*

  Nucleotide sequence: 1476 bp    

>T6CP005233 NC_012583:117428-118903 [Vibrio cholerae O395] [TssC]
ATGTCTACGACTGAAAAGGTATTGGAAAGGCCACAGCTTGCTCAAGGCAGCCTTCTTGATGAAATTATGGCGCAAACCCG
TATCGCACCAAGCGAAGAGGGTTACGACATCGCGAAAAAAGGTGTTGCAGCGTTTATCGAAAATCTTATGGGTTCACAAC
ACTCTGCTGAGCCTGTCAACAAATCTCTGGTTGACCAAATGTTGGTTGAACTGGATAAGAAAATCAGTGCACAGATGGAT
GAAATCCTGCACAACTCGCAATTTCAAGCGATGGAATCGGCGTGGCGCGGTTTGAAGCTGTTCGTGGATCGCACTGATTT
TCGTGAAAATAACAAAGTCGAAATCCTTCACGTAACCAAAGATGAACTGCTGGAAGATTTCGAGTTTGCTCCAGAAACGG
CTCAGTCCGGTCTTTACAAGCACGTTTATTCTGCCGGTTATGGTCAATTTGGTGGCGAACCTGTTGGCGCGATCATTGGT
AACTATGCGTTTACCCCTTCAACGCCAGATATGAAGCTGCTGCAATACATGGGCGCACTGGGTGCCATGGCGCATGCTCC
TTTCATTTCAAGCGTAGGTCCTGAATTCTTTGGTATCGATTCTTTTGAAGAACTGCCTAACATTAAAGATCTCAAGTCGA
CATTTGAAAGCCCGAAATACACCAAATGGCGTTCATTGCGTGAATCGGAAGATGCGCGCTATCTTGGTTTGACTGCGCCT
CGTTTCCTGCTGCGTGTTCCTTACGATCCAATCGAAAATCCAGTGAAGTCGTTCAATTATGCGGAAAACGTCAGTGCTTC
GCACGAGCACTACCTGTGGGGTAACACGGCATTTGCCTTCGCAACTCGTTTGACGGATAGCTTTGCTAAATATCGCTGGT
GTCCAAACATTATCGGTCCACAAAGTGGTGGTGCAGTTGAAGATCTGCCGGTGCATGTCTTTGAATCTATGGGTGCATTG
CAAAGCAAGATCCCAACCGAAGTCCTGATCACGGACCGTAAAGAGTTTGAACTGGCGGAAGAAGGTTTTATTGCTCTTAC
TATGCGTAAAGGCAGTGATAACGCGGCGTTCTTCTCTGCAAACTCCATTCAAAAACCTAAGGTTTTCCCAAATACCAAAG
AAGGCAAAGAAGCGGAAACCAACTACAAGTTGGGTACCCAGTTGCCGTACATGATGATCATCAACCGTTTGGCGCACTAT
GTGAAAGTTCTGCAACGTGAGCAGATCGGTGCTTGGAAAGAGCGTCAAGATCTTGAGCGTGAACTGAACTCATGGATCAA
ACAATACGTTGCTGATCAAGAGAACCCACCTGCAGACGTACGTAGCCGTCGTCCACTTCGTGCTGCGCGCATTGAAGTGA
TGGATGTGGAAGGCAATCCAGGTTGGTATCAGGTGTCGCTCTCGGTTCGTCCTCACTTTAAGTACATGGGTGCGAACTTT
GAGTTGTCATTAGTTGGACGTCTTGATCAAGCCTGA