Detailed information of component protein


Summary

Component ID T6CP008782
Component protein type TssA
T6SS ID (Type) T6SS00487 insolico (Type Unknown)
Strain Vibrio cholerae O395
Replicon chromosome II
Sequence Protein sequence (421 a.a.); Nucleotide sequence (1263 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) VC395_RS14800
Coordinate (Strand) 136080..137342 (+)
NCBI ID WP_000073077.1
RefSeq NC_012583
Uniprot ID A0A0X1L1P2_VIBCO, A0A0K9UV34_VIBCL, A0A023PRI8_VIBCL
KEGG ID vcq:EN18_04330
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
ImpA_N PF06812.14 1.3e-08 25..99
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 421 a.a.    

>T6CP008782 NC_012583:136080-137342 [Vibrio cholerae O395] [TssA]
MSNVIFIDNVCYRLTNDSEEIRGLEPYAKVREEINRRFNPIAGGTDWAVVKEYCEQLACNQGMDFLICGYYAVACLKTQG
LAGYATGMELMSASLANQGECDVKSAKVRKEILDWVNARVVQELKALKPTYESLRDLYRAERHCERLHQLFEQQQTEYKV
DFEGVGFALFEHIDRIETQYHSLLKKQEKAQPPKLKFWQRGYALFTLGVLGVALGMVGGYWGWPWFYTTPYAAPQRITTL
NEASQTQALLNDSSTSERARWQHDLIPLYRDTLQQNLTISFSEPKRHAITQLNLLRTLYPENEQVNALSQEFALQQQQAL
EQTALFVAKFSEIRTKMANISLLAKRGKWAELEKQTKSLEEFAVSLSPIYGRVDYVQGLLEQGDVTNAQKEFAILKQRLD
SLSWKIAELEQRIGDAALLQ*

  Nucleotide sequence: 1263 bp    

>T6CP008782 NC_012583:136080-137342 [Vibrio cholerae O395] [TssA]
ATGTCCAATGTGATTTTTATTGATAACGTTTGCTACCGATTAACCAATGATTCTGAGGAGATTCGCGGATTAGAGCCCTA
TGCGAAGGTTCGTGAGGAGATAAACCGCCGCTTCAATCCGATTGCTGGGGGCACGGATTGGGCAGTGGTAAAAGAGTACT
GTGAACAACTGGCCTGTAACCAAGGAATGGATTTTCTGATCTGCGGTTACTATGCGGTAGCCTGCCTGAAAACTCAGGGG
TTAGCGGGGTATGCCACCGGTATGGAGCTGATGAGTGCAAGCCTTGCCAACCAAGGTGAGTGTGATGTGAAAAGCGCCAA
AGTGCGCAAAGAGATCCTTGATTGGGTCAATGCACGTGTGGTGCAGGAACTGAAAGCACTTAAGCCAACTTATGAGTCGC
TGCGAGATCTGTATCGGGCTGAGCGCCATTGCGAGCGGTTACATCAGCTGTTTGAACAGCAACAAACCGAATACAAAGTA
GACTTTGAAGGGGTCGGGTTTGCTCTGTTTGAACACATAGACAGAATTGAAACCCAATACCACAGCTTATTGAAAAAGCA
GGAGAAGGCTCAGCCACCTAAGCTTAAGTTTTGGCAGCGCGGTTACGCGTTGTTCACTCTAGGTGTACTCGGGGTTGCAC
TGGGAATGGTGGGGGGCTACTGGGGGTGGCCTTGGTTTTATACCACGCCTTATGCCGCGCCACAGCGCATCACTACGTTG
AATGAGGCCTCTCAAACTCAAGCACTGCTCAACGACTCTTCCACAAGTGAGCGTGCGCGTTGGCAACATGATCTGATCCC
GCTGTATCGCGATACTTTGCAGCAGAATTTAACCATCTCGTTTAGTGAACCTAAGCGACATGCCATCACTCAGCTGAATC
TATTGCGCACTCTTTATCCTGAAAACGAGCAAGTGAATGCACTGAGTCAAGAGTTTGCCCTTCAGCAGCAACAAGCGTTG
GAGCAAACCGCGCTGTTCGTGGCTAAGTTCAGCGAAATTCGCACCAAAATGGCCAATATCTCGTTATTGGCTAAGCGAGG
GAAATGGGCTGAGTTAGAAAAGCAGACCAAATCATTAGAAGAGTTCGCGGTCAGCCTATCACCGATTTATGGTCGAGTTG
ACTATGTGCAAGGCCTCCTTGAACAGGGCGATGTCACAAATGCCCAGAAAGAGTTTGCGATCCTCAAACAAAGGCTAGAT
AGCCTAAGTTGGAAAATTGCCGAGCTTGAGCAGCGTATCGGCGATGCGGCTTTGTTGCAGTGA