Detailed information of component protein


Summary

Component ID T6CP011918
Component protein type PAAR
T6SS ID (Type) T6SS00487 insolico (Type Unknown)
Strain Vibrio cholerae O395
Replicon chromosome II
Sequence Protein sequence (95 a.a.); Nucleotide sequence (285 bp)
Reference
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insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) VC395_RS14715
Coordinate (Strand) 115173..115457 (+)
NCBI ID WP_000526403.1
RefSeq NC_012583
Uniprot ID A0A366AD93_9VIBR, A0A366ATG9_9VIBR, Q9KN60_VIBCH, A0A0X1L1U8_VIBCO, A0A0H3AD95_VIBC3, A0A0K9UV59_VIBCL, A0A0H3Q6K2_VIBCL, A0A2V4NAH1_VIBCL
KEGG ID vcq:EN18_04250, vch:VCA0105, vco:VC0395_0034
PDB ID 4JIV
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
PAAR_motif PF05488.15 3e-18 19..85
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
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  Protein sequence: 95 a.a.    

>T6CP011918 NC_012583:115173-115457 [Vibrio cholerae O395] [PAAR]
MGNGIVVGHLGTDHDGFPPTPVTAGSATVRYDGIPAARLGDPLAPHDKPKHPSHGRAIAAGSGTVMIDGKPAARVGDAVD
CGGVLQGASSVNIG*

  Nucleotide sequence: 285 bp    

>T6CP011918 NC_012583:115173-115457 [Vibrio cholerae O395] [PAAR]
ATGGGTAACGGAATCGTAGTAGGGCATTTAGGTACAGATCATGATGGTTTCCCGCCAACGCCAGTGACCGCAGGCTCAGC
AACTGTGCGTTATGATGGGATTCCAGCTGCTCGGCTTGGGGACCCCTTGGCCCCTCACGATAAACCAAAGCATCCCTCGC
ATGGCCGAGCGATTGCTGCGGGTTCTGGGACGGTGATGATTGATGGAAAACCCGCAGCAAGGGTTGGAGATGCGGTCGAT
TGTGGTGGCGTATTACAGGGAGCAAGCAGTGTCAACATTGGTTAA