Detailed information of component protein
Summary
| Component ID | T6CP005239 |
| Component protein type | TssI |
| T6SS ID (Type) | T6SS00487  (Type Unknown) |
| Strain | Vibrio cholerae O395 |
| Replicon | chromosome II |
| Sequence | Protein sequence (1018 a.a.); Nucleotide sequence (3054 bp) |
| Reference | - |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | |
| Coordinate (Strand) | 137595..140648 (+) |
| NCBI ID | WP_000113294.1 |
| RefSeq | NC_012583 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| - | - |
Protein sequence: 1018 a.a.
Nucleotide sequence: 3054 bp