Detailed information of component protein


Summary

Component ID T6CP008780
Component protein type TssE
T6SS ID (Type) T6SS00487 insolico (Type Unknown)
Strain Vibrio cholerae O395
Replicon chromosome II
Sequence Protein sequence (142 a.a.); Nucleotide sequence (426 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) VC395_RS14735
Coordinate (Strand) 118906..119331 (+)
NCBI ID WP_000220998.1
RefSeq NC_012583
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
GPW_gp25 PF04965.16 9.6e-14 38..120
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 142 a.a.    

>T6CP008780 NC_012583:118906-119331 [Vibrio cholerae O395] [TssE]
MTYIAPEESAFGVGFFERLEANAKPMSLTRGPDAWDVLESIKRNVSNILNTRIGGAQSAPHLGLVDFNDATLETLDLSVR
IKLAIQQCLERYEPRLTRADQDSFNSLTLRFHITATINSEALHEKVQFSLLLDQSRKYRVF*

  Nucleotide sequence: 426 bp    

>T6CP008780 NC_012583:118906-119331 [Vibrio cholerae O395] [TssE]
ATGACGTACATCGCACCTGAAGAGAGTGCATTTGGTGTTGGCTTTTTCGAACGTTTGGAAGCCAACGCCAAACCTATGTC
GCTGACCCGTGGGCCAGACGCGTGGGATGTACTCGAATCGATCAAACGGAATGTCTCTAACATTCTGAACACTCGAATTG
GTGGAGCGCAAAGTGCCCCTCATCTCGGGTTGGTGGATTTTAATGATGCAACGCTGGAAACCTTAGATCTCTCCGTGCGA
ATTAAATTGGCGATTCAACAGTGCCTTGAGCGCTATGAGCCGCGTTTAACTCGAGCGGATCAAGATAGCTTTAACTCGCT
GACTTTAAGGTTCCACATTACCGCGACCATCAATAGCGAAGCGTTACACGAAAAAGTCCAGTTCAGTCTGTTATTGGATC
AAAGCAGAAAATATCGAGTGTTTTAA