Detailed information of component protein


Summary

Component ID T6CP005235
Component protein type TssG
T6SS ID (Type) T6SS00487 insolico (Type Unknown)
Strain Vibrio cholerae O395
Replicon chromosome II
Sequence Protein sequence (339 a.a.); Nucleotide sequence (1017 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) VC395_RS14745
Coordinate (Strand) 121070..122086 (+)
NCBI ID WP_000510174.1
RefSeq NC_012583
Uniprot ID A0A366AU28_9VIBR, A0A023PSD2_VIBCL
KEGG ID vcx:VAA049_1797
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 1.4e-88 28..324
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 339 a.a.    

>T6CP005235 NC_012583:121070-122086 [Vibrio cholerae O395] [TssG]
MGHTERNAAVDLNSDPAQASPLSLPGNVREYNFYQLVELLQKLADINPESEEWERDCRLVFSANPSLGFSPSDVMALEAR
DDDRWVMLTNFFGLSGAQSPLPGFILEQLVTEEPGGYKQPFLDFFNNRLINLVYRVWRKYRYYVRFQPGAQDVFSAQLFA
LVGLGDPDLRGETPINWCKMLAYAGTLAGRSRSPQVVAGIIAHCFDLPDVSIRQWVRRRVSIDRSQQLALGKQNARLGMD
TVIGESVIDCSGKFIICIKRLSRSRFADFLPSGKEYQPLCKLVEFILREQMAYDLELAMDEREAPLFCLDAKQNIALGWT
SFLGQDAANKHVLIQVRQ*

  Nucleotide sequence: 1017 bp    

>T6CP005235 NC_012583:121070-122086 [Vibrio cholerae O395] [TssG]
ATGGGGCACACAGAGCGGAATGCAGCCGTTGATCTGAATTCAGATCCAGCGCAAGCCTCTCCCTTGAGCTTGCCGGGCAA
TGTACGGGAATACAACTTCTACCAACTGGTTGAGCTGTTGCAAAAACTGGCTGATATCAATCCTGAATCGGAAGAGTGGG
AGCGCGATTGCCGCTTGGTGTTCAGTGCTAACCCGAGCCTTGGATTTTCGCCTAGTGATGTGATGGCGCTTGAAGCGCGT
GACGATGATCGCTGGGTTATGTTGACCAACTTTTTTGGCCTTTCCGGTGCACAGTCACCTCTGCCGGGGTTCATCCTTGA
GCAATTGGTGACGGAAGAGCCTGGGGGGTATAAGCAGCCGTTTCTCGATTTTTTCAATAACCGATTGATTAATTTGGTTT
ATCGCGTTTGGCGTAAATACCGTTACTACGTACGTTTTCAGCCCGGTGCGCAGGATGTGTTCTCTGCACAGCTGTTTGCG
CTGGTGGGGTTGGGCGATCCTGACCTTCGCGGTGAAACGCCGATCAACTGGTGCAAAATGCTGGCTTACGCGGGCACGCT
GGCCGGACGTAGCCGTTCGCCACAAGTCGTGGCCGGCATTATTGCTCACTGTTTTGATTTACCGGATGTCTCCATTCGCC
AGTGGGTCAGACGTCGGGTATCGATTGACCGGAGTCAGCAACTGGCGCTGGGCAAGCAGAATGCGCGGTTGGGGATGGAC
ACGGTGATTGGCGAGTCCGTTATTGATTGTAGTGGAAAATTTATTATCTGTATCAAACGGTTATCTCGCAGTCGTTTTGC
TGATTTTTTGCCCTCCGGTAAAGAGTATCAGCCACTTTGCAAGCTGGTGGAGTTTATTTTGCGCGAACAGATGGCGTACG
ACCTCGAGCTGGCGATGGATGAACGGGAAGCGCCGCTGTTTTGTCTGGATGCGAAACAGAATATCGCCCTCGGCTGGACT
TCGTTTCTTGGCCAAGATGCAGCCAATAAACATGTGTTAATTCAAGTAAGGCAATAA