Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS00073  |
| T6SS type | Type i3 |
| Strain | Burkholderia pseudomallei K96243 |
| Replicon (RefSeq) | chromosome II (NC_006351) |
| Location | 221397..248704 |
| Function | - |
| Comment | - |
| References | [1] Burtnick MN et al (2011) The cluster 1 type VI secretion system is a major virulence determinant in Burkholderia pseudomallei. Infect Immun. 79(4):1512-25. [PudMed:21300775] |
Bioinformatics investigation has been performed.T6SS components and genome coordinates
| Component | TagJ | TssA | TssB | TssC | TssD | TssE | TssF | TssG | TssH | TssI | TssJ | TssK | TssL | TssM |
| Number | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
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Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| BPS_RS19475 | 217017..217988 | + | 972 | WP_004187502.1 | quinone oxidoreductase | ||
| BPS_RS19480 | 218043..218969 | + | 927 | WP_004523563.1 | dioxygenase | ||
| BPS_RS19485 | 219213..220559 | - | 1347 | WP_038726613.1 | LysR family transcriptional regulator | ||
| BPS_RS19490 | 221144..221377 | - | 234 | WP_004533760.1 | hypothetical protein | ||
| T6CP000638 | TssM | BPS_RS19495 (tssM) | 221397..225473 | - | 4077 | WP_004554727.1 | type VI secretion system membrane subunit TssM |
| T6CP000639 | TssL | BPS_RS19500 (tssL) | 225502..226767 | - | 1266 | WP_004529718.1 | type VI secretion system protein TssL, long form |
| T6CP000640 | TssK | BPS_RS19505 (tssK) | 226856..228202 | - | 1347 | WP_004531523.1 | type VI secretion system baseplate subunit TssK |
| T6CP000641 | TssJ | BPS_RS19510 (tssJ) | 228224..228727 | - | 504 | WP_004529720.1 | type VI secretion system lipoprotein TssJ |
| T6CP000642 | TssD | BPS_RS19515 | 228834..229319 | - | 486 | WP_004188308.1 | type VI secretion system tube protein Hcp |
| T6CP000643 | TssC | BPS_RS19520 (tssC) | 229436..230935 | - | 1500 | WP_004188012.1 | type VI secretion system contractile sheath large subunit |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed. Bioinformatics investigation has been performed.
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Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|---|---|---|---|---|---|---|---|
| No matching records found | ||||||||
Experimental investigation has been performed. Bioinformatics investigation has been performed.
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Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|---|
| No matching records found | |||||||
Experimental investigation has been performed. Bioinformatics investigation has been performed.
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Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|
| No matching records found | ||||||
Experimental investigation has been performed.
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Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
|---|---|---|---|---|---|---|---|---|
| No matching records found | ||||||||