Detailed information of T6SS

Note: only experimentally validated proteins are displayed in the graph.


Summary

T6SS ID T6SS00073 insolico
T6SS type Type i3
Strain Burkholderia pseudomallei K96243
Replicon (RefSeq) chromosome II (NC_006351)
Location 221397..248704
Function -
Comment -
References
[1] Burtnick MN et al (2011) The cluster 1 type VI secretion system is a major virulence determinant in Burkholderia pseudomallei. Infect Immun. 79(4):1512-25. [PudMed:21300775]
insolico Bioinformatics investigation has been performed.

T6SS components and genome coordinates

ComponentTagJTssATssBTssCTssDTssETssFTssGTssHTssITssJTssKTssLTssM
Number11111111111111


Component ID Component Locus tag (Gene) Coordinate Strand Size (bp) NCBI ID Product
BPS_RS19475 217017..217988 + 972 WP_004187502.1 quinone oxidoreductase
BPS_RS19480 218043..218969 + 927 WP_004523563.1 dioxygenase
BPS_RS19485 219213..220559 - 1347 WP_038726613.1 LysR family transcriptional regulator
BPS_RS19490 221144..221377 - 234 WP_004533760.1 hypothetical protein
T6CP000638 TssM BPS_RS19495 (tssM) 221397..225473 - 4077 WP_004554727.1 type VI secretion system membrane subunit TssM
T6CP000639 TssL BPS_RS19500 (tssL) 225502..226767 - 1266 WP_004529718.1 type VI secretion system protein TssL, long form
T6CP000640 TssK BPS_RS19505 (tssK) 226856..228202 - 1347 WP_004531523.1 type VI secretion system baseplate subunit TssK
T6CP000641 TssJ BPS_RS19510 (tssJ) 228224..228727 - 504 WP_004529720.1 type VI secretion system lipoprotein TssJ
T6CP000642 TssD BPS_RS19515 228834..229319 - 486 WP_004188308.1 type VI secretion system tube protein Hcp
T6CP000643 TssC BPS_RS19520 (tssC) 229436..230935 - 1500 WP_004188012.1 type VI secretion system contractile sheath large subunit
T6CP000644 TssB BPS_RS19525 (tssB) 230970..231551 - 582 WP_004523554.1 type VI secretion system contractile sheath small subunit
T6CP000645 TssH BPS_RS19530 (tssH) 231587..234526 - 2940 WP_011205357.1 type VI secretion system ATPase TssH
BPS_RS19535 235032..235778 + 747 WP_009939172.1 TagK domain-containing protein
T6CP012712 TagJ BPS_RS19540 235775..236740 + 966 WP_011205359.1 hypothetical protein
T6CP000646 TssE BPS_RS19545 (tssE) 236727..237308 + 582 WP_004551229.1 type VI secretion system baseplate subunit TssE
T6CP000647 TssF BPS_RS19550 (tssF) 237339..239228 + 1890 WP_004523549.1 type VI secretion system baseplate subunit TssF
T6CP000648 TssG BPS_RS19555 (tssG) 239228..240313 + 1086 WP_045606160.1 type VI secretion system baseplate subunit TssG
T6CP000649 TssA BPS_RS19560 240376..241455 + 1080 WP_172966718.1 type VI secretion system ImpA family N-terminal domain-containing protein
T6CP000650 TssI BPS_RS19565 (tssI) 241527..243854 + 2328 WP_004549277.1 type VI secretion system tip protein VgrG
BPS_RS19570 243886..246363 + 2478 WP_004551232.1 DUF2169 domain-containing protein
BPS_RS19575 246360..247442 + 1083 WP_004529730.1 pentapeptide repeat-containing protein
BPS_RS19585 247624..248283 + 660 WP_004533832.1 DUF3540 domain-containing protein
BPS_RS19590 248324..248704 + 381 WP_004529733.1 DUF4150 domain-containing protein
BPS_RS19595 249406..251322 - 1917 WP_004529735.1 SMP-30/gluconolactonase/LRE family protein
BPS_RS19600 251662..252555 - 894 WP_004523537.1 LysR family transcriptional regulator
BPS_RS19605 252651..253427 + 777 WP_004187753.1 NAD(P)H-dependent oxidoreductase
flank Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files

    

Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed.
Regulator ID Locus tag (Gene) Regulator type Regulatory pathway Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID Target (Regulation)

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed.
Effector ID Locus tag (Gene) Classification Cognate immunity protein Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed.
Immunity protein ID Locus tag (Gene) Cognate effector Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID

experimental Experimental investigation has been performed.
Accessory protein ID Locus tag (Gene) Type             Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID Related structure protein Related effector