Detailed information of component protein


Summary

Component ID T6CP000650
Component protein type TssI
T6SS ID (Type) T6SS00073 insolico (Type i3)
Strain Burkholderia pseudomallei K96243
Replicon chromosome II
Sequence Protein sequence (776 a.a.); Nucleotide sequence (2328 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) BPS_RS19565
Coordinate (Strand) 241527..243854 (+)
NCBI ID WP_004549277.1
RefSeq NC_006351
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 8.2e-98 36..362
Phage_base_V PF04717.14 3.8e-13 417..484
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-775 MPNFSAARTVTVSGPAVPTTPVGEPALELSAIRGDETLSQIYSYTLDCLTPPDPLLAHERAANLDLKAMIGKALTVTVQLEGMGSFVPGMPGMAGAANIGAGAREISGIVTGARFEGQLNRQCRYRLTMRPWIYLADLRSDYRIFQNRSVDEIVDEVLNAYSYSYDKRLSGRYPKLGYQVQYGETDFAFIQRLMQEHGIYWFFEHTNQVHRMVLVDHLGAHKPVESAAYRTLRYYPPGHKIDAEYIDRFSTEEHIRPGRWATGDFDFEKPNADLGVENALPRDTAHNGLERYEWPGDYTAREHGEHLARVRMEQTRARGERASGGGNVRDIVCGTTFALAGHPHASANREYLVIGATFEATETGGASGPGAYRIDTSFVAQPATTAFRPPRTVRKPRTRGPQTAIVTGPRGQDIWTDQYGRVKLKFHWDRSLVDDQNSSCWVRVSYAWSGNNYGGVNIPRVGSEVVVDFEHGDPDRPLVTGQVYNALHMPPWPLPENATQSGFMTRSPAGGGENANMLRFEDKAGEEQVKLHAERNYDVSVERDATTAVGRKHLTLVGVDLMPVMSTRSPLERLIDLLRTGGAASPAASGQPAAASRQPSGQQQQHQQQHQQHQRQRQPYQQLKQQRQMQRAGGWQALAANVAKTLQEIVAVLTDPFVTASVSTVQGASTSVVFGDAKGVHVGDTVKITSGDAHSEVNGTASSKDVNSVSLKGTSTSLTGVSTSETGTNIVTTGLTVSTTGASVSTTGFSATETLVQVAKKTQECEFIKGIKISM


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.8323 - -


  Protein sequence: 776 a.a.    

>T6CP000650 NC_006351:241527-243854 [Burkholderia pseudomallei K96243] [TssI]
MPNFSAARTVTVSGPAVPTTPVGEPALELSAIRGDETLSQIYSYTLDCLTPPDPLLAHERAANLDLKAMIGKALTVTVQL
EGMGSFVPGMPGMAGAANIGAGAREISGIVTGARFEGQLNRQCRYRLTMRPWIYLADLRSDYRIFQNRSVDEIVDEVLNA
YSYSYDKRLSGRYPKLGYQVQYGETDFAFIQRLMQEHGIYWFFEHTNQVHRMVLVDHLGAHKPVESAAYRTLRYYPPGHK
IDAEYIDRFSTEEHIRPGRWATGDFDFEKPNADLGVENALPRDTAHNGLERYEWPGDYTAREHGEHLARVRMEQTRARGE
RASGGGNVRDIVCGTTFALAGHPHASANREYLVIGATFEATETGGASGPGAYRIDTSFVAQPATTAFRPPRTVRKPRTRG
PQTAIVTGPRGQDIWTDQYGRVKLKFHWDRSLVDDQNSSCWVRVSYAWSGNNYGGVNIPRVGSEVVVDFEHGDPDRPLVT
GQVYNALHMPPWPLPENATQSGFMTRSPAGGGENANMLRFEDKAGEEQVKLHAERNYDVSVERDATTAVGRKHLTLVGVD
LMPVMSTRSPLERLIDLLRTGGAASPAASGQPAAASRQPSGQQQQHQQQHQQHQRQRQPYQQLKQQRQMQRAGGWQALAA
NVAKTLQEIVAVLTDPFVTASVSTVQGASTSVVFGDAKGVHVGDTVKITSGDAHSEVNGTASSKDVNSVSLKGTSTSLTG
VSTSETGTNIVTTGLTVSTTGASVSTTGFSATETLVQVAKKTQECEFIKGIKISM*

  Nucleotide sequence: 2328 bp    

>T6CP000650 NC_006351:241527-243854 [Burkholderia pseudomallei K96243] [TssI]
ATGCCGAATTTTTCCGCCGCCCGCACCGTGACGGTGAGCGGCCCTGCCGTGCCGACGACTCCCGTCGGCGAGCCCGCGCT
CGAACTGAGCGCGATCCGGGGCGACGAAACGCTATCGCAGATCTATTCGTACACGCTCGATTGCCTGACGCCGCCGGACC
CGTTGCTCGCGCACGAGCGGGCCGCGAATCTCGATCTGAAGGCGATGATCGGCAAGGCGCTGACCGTGACCGTGCAGCTC
GAAGGCATGGGCTCGTTCGTGCCCGGCATGCCGGGCATGGCGGGCGCGGCCAATATCGGCGCGGGCGCGCGCGAGATCAG
CGGCATCGTGACCGGCGCGCGCTTCGAGGGCCAACTGAACCGGCAGTGCCGCTACCGGCTGACGATGCGGCCGTGGATCT
ACCTGGCCGACCTGCGCTCGGACTACCGGATTTTCCAGAACCGGAGCGTCGACGAGATCGTCGACGAAGTGCTGAACGCG
TATTCGTACTCGTACGACAAGCGCTTGAGCGGCCGGTATCCGAAGCTCGGCTACCAGGTGCAGTACGGCGAGACCGATTT
CGCGTTCATCCAGCGGCTGATGCAGGAGCACGGCATCTACTGGTTTTTCGAGCATACGAACCAGGTGCACCGGATGGTGC
TCGTCGATCACCTGGGCGCGCACAAGCCGGTGGAGAGCGCCGCATACCGCACGCTGCGCTACTACCCGCCGGGGCACAAG
ATCGACGCCGAGTACATCGACAGGTTCAGCACCGAGGAGCACATCCGGCCGGGCCGCTGGGCGACGGGCGATTTCGATTT
CGAGAAGCCGAACGCGGACCTGGGCGTCGAGAACGCGCTGCCGCGGGACACCGCGCACAACGGGCTCGAACGTTACGAGT
GGCCGGGCGACTACACGGCGCGCGAGCACGGCGAGCACCTCGCGCGCGTGCGCATGGAACAGACGCGCGCGCGGGGCGAG
CGCGCATCGGGCGGCGGCAACGTGCGCGACATCGTGTGCGGCACGACATTCGCGCTCGCGGGCCATCCGCACGCGAGCGC
GAACCGCGAGTATCTGGTGATCGGCGCGACGTTCGAGGCGACGGAGACGGGCGGCGCGTCGGGGCCGGGCGCATATCGGA
TCGACACGTCGTTCGTCGCGCAGCCGGCGACCACCGCGTTCCGGCCGCCGCGCACGGTGCGCAAGCCGCGCACGCGCGGG
CCGCAGACGGCGATCGTCACCGGCCCGCGAGGGCAGGACATCTGGACGGACCAGTACGGCCGTGTGAAGCTGAAATTCCA
CTGGGACCGTTCGCTCGTCGACGATCAGAACTCGTCGTGCTGGGTGCGCGTTTCCTATGCGTGGTCGGGCAACAATTACG
GCGGCGTCAATATTCCGCGCGTGGGCTCCGAAGTGGTCGTCGATTTCGAGCACGGCGACCCGGACCGGCCGCTCGTGACG
GGGCAGGTATACAACGCGCTGCACATGCCGCCGTGGCCGTTGCCGGAGAACGCGACGCAAAGCGGCTTCATGACGCGCTC
GCCCGCGGGCGGCGGCGAGAACGCGAACATGCTGCGCTTCGAGGACAAGGCGGGCGAGGAGCAGGTCAAGCTGCATGCGG
AGCGCAATTACGACGTATCGGTCGAGCGCGACGCGACGACTGCCGTCGGGCGCAAGCACCTGACGCTCGTCGGCGTCGAC
CTGATGCCGGTGATGTCGACGCGCTCGCCGCTGGAGCGGCTGATCGACCTGCTGCGCACGGGCGGCGCGGCCAGCCCGGC
GGCGTCGGGGCAGCCGGCGGCGGCTTCTCGGCAACCGTCGGGACAGCAGCAGCAACATCAACAGCAACACCAGCAACATC
AGCGGCAACGCCAGCCCTATCAGCAGTTGAAGCAGCAGCGCCAGATGCAGCGCGCGGGCGGATGGCAGGCGCTCGCGGCG
AACGTCGCGAAGACGTTGCAGGAAATCGTGGCGGTGCTCACGGACCCGTTCGTCACCGCGTCGGTGAGCACCGTGCAGGG
CGCGTCGACGTCCGTCGTGTTCGGCGACGCGAAGGGCGTGCACGTGGGCGATACCGTCAAGATCACCAGCGGAGACGCGC
ATTCGGAGGTCAACGGCACGGCATCGTCGAAGGACGTGAACAGTGTCTCGCTGAAGGGCACGTCGACCAGCCTGACCGGG
GTCAGCACCTCCGAAACGGGGACGAACATCGTGACGACCGGACTCACGGTATCAACGACCGGCGCGAGCGTTTCGACGAC
CGGATTCAGTGCGACCGAAACGCTCGTGCAGGTCGCCAAGAAGACGCAGGAATGCGAATTCATCAAGGGCATCAAGATCT
CGATGTGA