Detailed information of component protein


Summary

Component ID T6CP000643
Component protein type TssC
T6SS ID (Type) T6SS00073 insolico (Type i3)
Strain Burkholderia pseudomallei K96243
Replicon chromosome II
Sequence Protein sequence (500 a.a.); Nucleotide sequence (1500 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) BPS_RS19520
Coordinate (Strand) 229436..230935 (-)
NCBI ID WP_004188012.1
RefSeq NC_006351
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 2e-131 68..371
VipB_2 PF18945.2 2.8e-44 381..492
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-499 MKKQQAQTAAAGVQPQADSDFAQLLAQEFKPKTEQAREAVEYAVRTLAEQALAQSATISDDAYKSIAAIIAQIDHKLSEQINLILHHADFQKLESAWRGLHHLVSNTETDERLKIRFMDISKEELRRTMRRYKGQSWDQSPLFKQIYEEEYGQLGGEPYGCLVADYYFDHTPPDVDLLGSISKVAASAHTPFLSGASPSVLQMESWQELANPRDLTKIFTQNLEYASWNALRNMDDARYIGLAMPRFLSRLPYGVLTNPVDEFDFEEDTNGADHRRYAWTNAAYAMGVNINRSFRLYGWCSLIRGVESGGTVENLPCHTFPTDDGGIDIKCPTEIAISDRREAELSKNGFIPLVHRKNTDHATFIGAQSLHKPAEYDDSDATANANLSARLPYLFACSRFAHYLKCIVRDKVGAFKEREDMQRWLNEWIMNYVDADPANSSQDTKARRPLAAAEVVVEQAQGNPGYYQAKFFLRPHFQLEGLTVSLRLVAKLPSIKEAA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9193 - -


  Protein sequence: 500 a.a.    

>T6CP000643 NC_006351:c230935-229436 [Burkholderia pseudomallei K96243] [TssC]
MKKQQAQTAAAGVQPQADSDFAQLLAQEFKPKTEQAREAVEYAVRTLAEQALAQSATISDDAYKSIAAIIAQIDHKLSEQ
INLILHHADFQKLESAWRGLHHLVSNTETDERLKIRFMDISKEELRRTMRRYKGQSWDQSPLFKQIYEEEYGQLGGEPYG
CLVADYYFDHTPPDVDLLGSISKVAASAHTPFLSGASPSVLQMESWQELANPRDLTKIFTQNLEYASWNALRNMDDARYI
GLAMPRFLSRLPYGVLTNPVDEFDFEEDTNGADHRRYAWTNAAYAMGVNINRSFRLYGWCSLIRGVESGGTVENLPCHTF
PTDDGGIDIKCPTEIAISDRREAELSKNGFIPLVHRKNTDHATFIGAQSLHKPAEYDDSDATANANLSARLPYLFACSRF
AHYLKCIVRDKVGAFKEREDMQRWLNEWIMNYVDADPANSSQDTKARRPLAAAEVVVEQAQGNPGYYQAKFFLRPHFQLE
GLTVSLRLVAKLPSIKEAA*

  Nucleotide sequence: 1500 bp    

>T6CP000643 NC_006351:c230935-229436 [Burkholderia pseudomallei K96243] [TssC]
ATGAAGAAACAGCAAGCCCAGACGGCCGCCGCCGGCGTCCAGCCGCAAGCGGATTCGGATTTCGCGCAGTTGCTCGCGCA
GGAGTTCAAGCCGAAGACGGAGCAGGCGCGCGAAGCGGTCGAATACGCGGTGCGCACGCTCGCCGAGCAGGCGCTCGCGC
AATCGGCGACGATCAGCGACGATGCATACAAGAGCATCGCCGCGATCATCGCGCAGATCGACCATAAGCTATCCGAACAG
ATCAACCTGATCCTCCATCACGCGGATTTCCAGAAGCTCGAATCGGCGTGGCGCGGGCTGCATCACCTGGTGTCGAACAC
CGAGACCGACGAGCGCCTGAAGATCCGCTTCATGGACATCTCGAAGGAAGAGCTGCGCCGCACGATGCGGCGCTACAAGG
GGCAATCGTGGGACCAGAGCCCGCTCTTCAAGCAGATCTATGAGGAGGAGTACGGGCAGCTCGGCGGCGAGCCGTACGGC
TGCCTCGTCGCCGATTACTACTTCGACCACACGCCGCCCGACGTCGACCTGCTCGGCTCGATCTCGAAGGTGGCAGCGTC
CGCGCACACGCCGTTCCTCTCCGGCGCGTCGCCTTCGGTGCTGCAGATGGAATCGTGGCAGGAGCTCGCGAACCCGCGCG
ACCTGACGAAGATCTTCACGCAAAACCTCGAATACGCGTCATGGAACGCGCTGCGCAACATGGACGACGCGCGCTACATC
GGCCTCGCGATGCCGCGCTTCCTGTCGCGCCTGCCGTACGGCGTGCTGACGAATCCCGTCGACGAGTTCGACTTCGAGGA
AGACACGAACGGCGCCGACCATCGCCGCTACGCGTGGACGAACGCCGCCTACGCGATGGGCGTGAACATCAACCGGTCGT
TCCGGCTCTACGGCTGGTGCTCGCTCATTCGCGGCGTCGAATCGGGCGGCACGGTCGAGAACCTGCCGTGCCATACGTTC
CCGACCGACGACGGCGGCATCGACATCAAATGCCCAACCGAGATCGCGATCTCGGACCGGCGCGAGGCGGAGCTGTCGAA
GAACGGCTTCATTCCGCTCGTGCACCGCAAGAACACCGATCACGCGACGTTCATCGGCGCGCAATCGCTGCACAAGCCGG
CCGAATACGACGATTCCGACGCGACGGCCAACGCGAACCTGTCGGCGCGCCTGCCGTATCTGTTCGCATGCTCGCGCTTC
GCGCACTACCTGAAGTGCATCGTGCGCGACAAGGTGGGCGCCTTCAAGGAGCGCGAGGACATGCAGCGCTGGCTGAACGA
ATGGATCATGAACTACGTCGACGCGGACCCGGCGAACTCGTCGCAGGACACGAAGGCGCGCCGGCCGCTCGCGGCCGCCG
AGGTGGTCGTCGAGCAGGCGCAGGGCAACCCCGGCTACTACCAGGCGAAGTTCTTCCTGCGGCCGCATTTCCAGCTCGAG
GGCCTGACCGTGTCGCTGCGGCTCGTCGCGAAGCTGCCGTCGATCAAGGAAGCCGCCTGA