Detailed information of component protein
Summary
| Component ID | T6CP000644 |
| Component protein type | TssB |
| T6SS ID (Type) | T6SS00073  (Type i3) |
| Strain | Burkholderia pseudomallei K96243 |
| Replicon | chromosome II |
| Sequence | Protein sequence (194 a.a.); Nucleotide sequence (582 bp) |
| Reference |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | BPS_RS19525 |
| Coordinate (Strand) | 230970..231551 (-) |
| NCBI ID | WP_004523554.1 |
| RefSeq | NC_006351 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_VipA | PF05591.14 | 1.4e-56 | 12..161 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-193 | MSASSSSQKFIARNRAPRVQIEYDVEVYGSEKKVELPFVMGVLADLSGKPVAPLPAVADRRFLDIDIDNFDERMKAIKPRVAFAVDNTLSGDGQLMVDMTFESIEDFSPAAIARMVGPLRQLLEARTQLANLQTYMDGKSGAETLVNQLLQDPALLRSLAAAPKPQLAGGPDAGNARGAKDAPDTANHDSDAA |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9924 | - | - |
Protein sequence: 194 a.a.
>T6CP000644 NC_006351:c231551-230970 [Burkholderia pseudomallei K96243] [TssB]
MSASSSSQKFIARNRAPRVQIEYDVEVYGSEKKVELPFVMGVLADLSGKPVAPLPAVADRRFLDIDIDNFDERMKAIKPR
VAFAVDNTLSGDGQLMVDMTFESIEDFSPAAIARMVGPLRQLLEARTQLANLQTYMDGKSGAETLVNQLLQDPALLRSLA
AAPKPQLAGGPDAGNARGAKDAPDTANHDSDAA*
MSASSSSQKFIARNRAPRVQIEYDVEVYGSEKKVELPFVMGVLADLSGKPVAPLPAVADRRFLDIDIDNFDERMKAIKPR
VAFAVDNTLSGDGQLMVDMTFESIEDFSPAAIARMVGPLRQLLEARTQLANLQTYMDGKSGAETLVNQLLQDPALLRSLA
AAPKPQLAGGPDAGNARGAKDAPDTANHDSDAA*
Nucleotide sequence: 582 bp
>T6CP000644 NC_006351:c231551-230970 [Burkholderia pseudomallei K96243] [TssB]
ATGTCCGCATCCAGCAGCTCTCAAAAATTCATCGCGCGCAACCGCGCGCCCCGCGTGCAGATCGAATACGACGTCGAAGT
CTACGGCTCGGAAAAGAAGGTCGAACTGCCGTTCGTGATGGGCGTGCTCGCCGACCTGTCGGGCAAGCCGGTCGCGCCGC
TGCCCGCCGTCGCCGACCGGCGCTTCCTCGACATCGACATCGACAACTTCGACGAGCGGATGAAGGCGATCAAGCCGCGC
GTGGCGTTCGCGGTGGACAACACGCTGTCGGGCGACGGGCAGCTGATGGTCGACATGACGTTCGAAAGCATCGAGGACTT
CTCGCCCGCCGCGATCGCGCGAATGGTCGGCCCGTTACGGCAATTGCTCGAGGCGCGCACGCAGCTCGCGAACCTGCAGA
CCTACATGGACGGCAAGTCGGGCGCCGAGACGCTCGTCAACCAGTTGCTGCAGGACCCGGCGCTGCTGCGCTCGCTCGCG
GCCGCGCCGAAGCCGCAGCTCGCGGGCGGGCCGGACGCGGGCAATGCGCGCGGCGCGAAGGACGCGCCCGACACGGCGAA
CCACGACAGCGATGCGGCCTGA
ATGTCCGCATCCAGCAGCTCTCAAAAATTCATCGCGCGCAACCGCGCGCCCCGCGTGCAGATCGAATACGACGTCGAAGT
CTACGGCTCGGAAAAGAAGGTCGAACTGCCGTTCGTGATGGGCGTGCTCGCCGACCTGTCGGGCAAGCCGGTCGCGCCGC
TGCCCGCCGTCGCCGACCGGCGCTTCCTCGACATCGACATCGACAACTTCGACGAGCGGATGAAGGCGATCAAGCCGCGC
GTGGCGTTCGCGGTGGACAACACGCTGTCGGGCGACGGGCAGCTGATGGTCGACATGACGTTCGAAAGCATCGAGGACTT
CTCGCCCGCCGCGATCGCGCGAATGGTCGGCCCGTTACGGCAATTGCTCGAGGCGCGCACGCAGCTCGCGAACCTGCAGA
CCTACATGGACGGCAAGTCGGGCGCCGAGACGCTCGTCAACCAGTTGCTGCAGGACCCGGCGCTGCTGCGCTCGCTCGCG
GCCGCGCCGAAGCCGCAGCTCGCGGGCGGGCCGGACGCGGGCAATGCGCGCGGCGCGAAGGACGCGCCCGACACGGCGAA
CCACGACAGCGATGCGGCCTGA