Detailed information of component protein


Summary

Component ID T6CP000645
Component protein type TssH
T6SS ID (Type) T6SS00073 insolico (Type i3)
Strain Burkholderia pseudomallei K96243
Replicon chromosome II
Sequence Protein sequence (980 a.a.); Nucleotide sequence (2940 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) BPS_RS19530
Coordinate (Strand) 231587..234526 (-)
NCBI ID WP_011205357.1
RefSeq NC_006351
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 5.4e-37 688..854
AAA_lid_9 PF17871.3 1.5e-27 374..464
ClpB_D2-small PF10431.11 1.3e-12 860..930
AAA PF00004.31 2.5e-10 233..364
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-979 MAISRQALFGKLGATLFRAIESATVFCKLRGNPYVELVHWLQQLLQQSDSDLHRIVRHAGIERDALDRDIARALAALPAGAGSISDFSHHVEAAIERAWVLATLRFGDRRIRGAWLVAALVDTPELRRVLLSISPAFARIPHDDALDDVLPAWTAGSPEAADAPYDHADSAPASPGEPSGATRAAPNGSPLERYCTDLTARARDGDIDPVIGRELEIRTMTDVLLRRRQNNPLLTGEAGVGKTAVVEGLALAIANGDVPPKLADVRLMSVDVGALLAGAGMKGEFEARLKGVLEAAAKSVAPVILFVDEIHTLIGAGGQAGTGDAANLLKPALARGTIRTIGATTWAEYKRHIEKDPALTRRFQVLQVPEPEEPAAVHMVRGVARAFARHHRVTVRDEAIRAAVALSHRYIPSRHLPDKAISLLDTACARVALSQHAAPGELQHVRQRLLAARAERDLLEQEARIGLDAGQSLAAVRERIEALAAEEAAVDARWKAQADAARALLAAREAALAECHRESCSETRAGSLSESRTESRTESRARSHIDSSAYAHSDVPAEMHVGSHAGSRAATCPDTHAEAHAAPASPPPAADTPHAGAAPGLRELERALAAAQGDAPLVFPEVDETIVAQIVADWTGIPVGRMMTDEVAAVRALPATLEARVIGQPDALRQIGERVQTARAGLADPKKPLGVFLLAGPSGVGKTETALALAEALYGGEQSLITINMSEYQEAHTVSGLKGAPPGYVGYGEGGVLTEAVRRRPYSVVLLDEIEKAHRDVHELFFQVFDKGYMEDGDGRYIDFRNTTILLTSNVGAELSASLCADASLAPDAAALRDALMPELLKVFPAAFLGRVSVVPYRPLEARALARIVRLHLDRVVARMAERHRIALAYDDAVVDYVVGRCLVQETGARLLIGFIEQHVLPRLSALWLDAFPSKAALARIDIGVADAAAPAARALVFRPGQASRAGPPNAPLTAVQAG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9155 - -


  Protein sequence: 980 a.a.    

>T6CP000645 NC_006351:c234526-231587 [Burkholderia pseudomallei K96243] [TssH]
MAISRQALFGKLGATLFRAIESATVFCKLRGNPYVELVHWLQQLLQQSDSDLHRIVRHAGIERDALDRDIARALAALPAG
AGSISDFSHHVEAAIERAWVLATLRFGDRRIRGAWLVAALVDTPELRRVLLSISPAFARIPHDDALDDVLPAWTAGSPEA
ADAPYDHADSAPASPGEPSGATRAAPNGSPLERYCTDLTARARDGDIDPVIGRELEIRTMTDVLLRRRQNNPLLTGEAGV
GKTAVVEGLALAIANGDVPPKLADVRLMSVDVGALLAGAGMKGEFEARLKGVLEAAAKSVAPVILFVDEIHTLIGAGGQA
GTGDAANLLKPALARGTIRTIGATTWAEYKRHIEKDPALTRRFQVLQVPEPEEPAAVHMVRGVARAFARHHRVTVRDEAI
RAAVALSHRYIPSRHLPDKAISLLDTACARVALSQHAAPGELQHVRQRLLAARAERDLLEQEARIGLDAGQSLAAVRERI
EALAAEEAAVDARWKAQADAARALLAAREAALAECHRESCSETRAGSLSESRTESRTESRARSHIDSSAYAHSDVPAEMH
VGSHAGSRAATCPDTHAEAHAAPASPPPAADTPHAGAAPGLRELERALAAAQGDAPLVFPEVDETIVAQIVADWTGIPVG
RMMTDEVAAVRALPATLEARVIGQPDALRQIGERVQTARAGLADPKKPLGVFLLAGPSGVGKTETALALAEALYGGEQSL
ITINMSEYQEAHTVSGLKGAPPGYVGYGEGGVLTEAVRRRPYSVVLLDEIEKAHRDVHELFFQVFDKGYMEDGDGRYIDF
RNTTILLTSNVGAELSASLCADASLAPDAAALRDALMPELLKVFPAAFLGRVSVVPYRPLEARALARIVRLHLDRVVARM
AERHRIALAYDDAVVDYVVGRCLVQETGARLLIGFIEQHVLPRLSALWLDAFPSKAALARIDIGVADAAAPAARALVFRP
GQASRAGPPNAPLTAVQAG*

  Nucleotide sequence: 2940 bp    

>T6CP000645 NC_006351:c234526-231587 [Burkholderia pseudomallei K96243] [TssH]
ATGGCGATCTCGCGTCAGGCGCTGTTCGGGAAACTCGGGGCTACGCTCTTCAGGGCGATCGAATCGGCCACGGTTTTCTG
CAAGCTGCGCGGCAATCCGTACGTCGAGCTGGTGCACTGGCTGCAGCAGTTGTTGCAGCAGTCCGACTCCGATCTGCACC
GGATCGTGCGGCACGCCGGCATCGAGCGCGACGCGCTCGATCGCGACATCGCGCGCGCGCTCGCCGCGCTGCCGGCCGGC
GCGGGCTCGATCAGCGATTTTTCCCATCACGTCGAAGCCGCGATCGAGCGCGCATGGGTGCTCGCGACGCTGCGCTTCGG
CGACCGGCGCATCCGCGGCGCATGGCTCGTCGCCGCGCTCGTCGATACGCCGGAACTGCGGCGCGTGCTGCTTTCCATTT
CGCCGGCGTTCGCGAGGATTCCTCACGACGACGCTCTCGACGACGTGCTGCCCGCGTGGACGGCCGGTTCGCCGGAAGCG
GCGGACGCGCCGTACGACCACGCCGATTCCGCGCCCGCTTCGCCGGGCGAGCCGTCCGGCGCGACGCGCGCCGCGCCGAA
CGGCTCGCCGCTCGAGCGATATTGCACGGACCTGACCGCGCGCGCGCGCGACGGCGACATCGACCCCGTCATCGGGCGCG
AGCTCGAAATCCGCACGATGACCGACGTGCTGCTGCGGCGCAGGCAGAACAATCCGCTGCTCACCGGCGAGGCGGGCGTG
GGCAAGACGGCCGTCGTCGAGGGCCTCGCGCTCGCGATCGCGAACGGCGACGTGCCGCCGAAGCTGGCCGACGTGCGCCT
GATGAGCGTCGACGTGGGCGCACTGCTGGCCGGCGCGGGCATGAAAGGCGAATTCGAAGCGCGCCTGAAAGGCGTGCTCG
AGGCCGCGGCGAAATCCGTTGCGCCCGTCATCCTGTTCGTCGACGAGATTCACACGCTGATCGGCGCGGGCGGACAGGCC
GGCACGGGCGACGCGGCGAACCTGCTCAAGCCCGCGCTCGCGCGCGGCACGATCCGCACGATCGGCGCGACGACATGGGC
GGAGTACAAGCGGCACATCGAAAAGGATCCCGCATTGACCCGCCGCTTTCAGGTGCTGCAAGTGCCGGAGCCCGAAGAGC
CGGCCGCGGTGCACATGGTGCGGGGCGTCGCGCGAGCGTTCGCGCGGCACCACCGCGTGACGGTGCGCGACGAGGCGATC
CGCGCCGCCGTCGCGCTGTCGCACCGCTACATTCCGTCGCGGCATCTGCCGGACAAGGCGATCAGCCTCCTCGACACCGC
ATGCGCGCGCGTCGCGCTCTCGCAGCACGCCGCGCCCGGCGAACTGCAGCACGTACGCCAGCGCTTGCTCGCGGCGCGCG
CCGAGCGCGATCTGCTCGAACAGGAGGCGCGCATCGGGCTCGACGCCGGGCAATCGCTCGCGGCGGTGCGCGAACGCATC
GAAGCGCTCGCGGCCGAGGAAGCGGCCGTCGACGCGCGCTGGAAGGCGCAGGCCGACGCGGCGCGCGCGCTGCTCGCCGC
GCGCGAGGCCGCACTCGCGGAATGTCACCGCGAGTCTTGCTCCGAAACGCGCGCCGGCTCGCTCTCCGAATCTCGTACCG
AATCTCGTACCGAATCGCGCGCCAGATCACACATCGACTCCAGCGCCTATGCTCACAGCGACGTCCCGGCCGAAATGCAC
GTCGGCTCGCACGCCGGCTCGCGCGCCGCAACGTGTCCGGACACGCACGCCGAAGCGCACGCCGCCCCCGCCTCGCCCCC
GCCCGCCGCCGATACGCCGCACGCCGGCGCCGCCCCCGGGCTGCGCGAGCTCGAACGCGCGCTCGCGGCGGCCCAGGGCG
ACGCACCGCTCGTGTTCCCGGAAGTCGACGAGACGATCGTCGCGCAGATCGTCGCGGATTGGACCGGCATTCCGGTCGGC
CGCATGATGACCGACGAAGTCGCCGCCGTGCGCGCGCTGCCCGCGACGCTCGAGGCGCGCGTGATCGGCCAGCCCGACGC
GCTGCGGCAGATCGGCGAGCGCGTGCAGACCGCGCGCGCGGGCCTCGCCGATCCGAAGAAGCCGCTCGGCGTATTCCTGC
TTGCGGGCCCGTCGGGCGTCGGCAAGACCGAAACGGCGCTCGCGCTCGCCGAGGCGCTGTACGGCGGCGAACAGAGCCTG
ATCACGATCAACATGAGCGAGTACCAGGAAGCCCACACCGTGTCGGGCCTCAAGGGCGCGCCGCCCGGCTATGTCGGCTA
CGGCGAGGGCGGCGTGCTGACCGAGGCGGTGCGGCGGCGGCCGTACAGCGTCGTGCTGCTCGACGAGATCGAGAAGGCGC
ACCGCGACGTGCACGAACTCTTCTTCCAGGTCTTCGACAAGGGCTACATGGAAGACGGCGACGGCCGCTACATCGATTTC
CGCAACACGACGATCCTGCTCACGAGCAACGTCGGCGCGGAACTGAGCGCGAGCCTGTGCGCCGACGCATCGCTCGCGCC
CGATGCCGCCGCGCTGCGCGACGCGCTCATGCCCGAACTGCTGAAGGTCTTCCCCGCCGCGTTCCTCGGGCGCGTGAGCG
TCGTGCCGTACCGGCCGCTCGAAGCGCGCGCGCTCGCGCGCATCGTGCGCCTGCATCTGGATCGCGTCGTCGCGCGCATG
GCCGAGCGGCACCGCATCGCGCTCGCGTACGACGACGCCGTCGTCGACTACGTCGTCGGGCGTTGCCTCGTGCAGGAAAC
CGGCGCGCGGCTGCTGATCGGATTCATCGAGCAGCACGTGCTGCCTCGGCTGTCCGCGCTGTGGCTCGACGCGTTCCCGT
CGAAGGCGGCGCTCGCGCGCATCGACATCGGTGTGGCCGACGCGGCCGCGCCCGCGGCGCGCGCGCTCGTCTTCCGGCCC
GGCCAAGCAAGCCGGGCGGGGCCGCCGAACGCGCCGCTCACCGCCGTGCAGGCCGGCTAG