Detailed information of component protein


Summary

Component ID T6CP000640
Component protein type TssK
T6SS ID (Type) T6SS00073 insolico (Type i3)
Strain Burkholderia pseudomallei K96243
Replicon chromosome II
Sequence Protein sequence (449 a.a.); Nucleotide sequence (1347 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) BPS_RS19505
Coordinate (Strand) 226856..228202 (-)
NCBI ID WP_004531523.1
RefSeq NC_006351
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 1.1e-138 20..446
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-448 MSWHNKVVWSEGLFMRPQLFQQQERYLEHYAHKRAAPLSPFFFGFSHFSLDSEAPALGKIIVKSASGVFADGTPFDAPGSTPPPAPLTIRPEHLDQVIYLAVPIRVPNGEETAFDRAAESLARYAVFETDLRDTNSIGQGPKTVQLSNLRLRLLPEKELTDAWIGLALTRVKTIRADASIELDDMLIPPVVGYGASDTLASWLAKIHDLTRLRANALAERLTGSDGRAGTTAEVSDYLLLQTLNRYEPLLKHLQRVPTTSPAELYALLIGMAGELSTYVRTDTRRPLDTHPPYQHVAPHLCLKPVVDDTHRLLNAVLVRSAQRLALADLGHGMLNAVVDPVDMQGFTAVVLAVHAQMPPDLLQQQFAAQAKAGPSERLPDLVRSHLSGIALQALPVPPRQIPFNAGYVYYELARGGPLWDEVARHGGLALHIAGEFPSLKLELWGIRG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9900 - -


  Protein sequence: 449 a.a.    

>T6CP000640 NC_006351:c228202-226856 [Burkholderia pseudomallei K96243] [TssK]
MSWHNKVVWSEGLFMRPQLFQQQERYLEHYAHKRAAPLSPFFFGFSHFSLDSEAPALGKIIVKSASGVFADGTPFDAPGS
TPPPAPLTIRPEHLDQVIYLAVPIRVPNGEETAFDRAAESLARYAVFETDLRDTNSIGQGPKTVQLSNLRLRLLPEKELT
DAWIGLALTRVKTIRADASIELDDMLIPPVVGYGASDTLASWLAKIHDLTRLRANALAERLTGSDGRAGTTAEVSDYLLL
QTLNRYEPLLKHLQRVPTTSPAELYALLIGMAGELSTYVRTDTRRPLDTHPPYQHVAPHLCLKPVVDDTHRLLNAVLVRS
AQRLALADLGHGMLNAVVDPVDMQGFTAVVLAVHAQMPPDLLQQQFAAQAKAGPSERLPDLVRSHLSGIALQALPVPPRQ
IPFNAGYVYYELARGGPLWDEVARHGGLALHIAGEFPSLKLELWGIRG*

  Nucleotide sequence: 1347 bp    

>T6CP000640 NC_006351:c228202-226856 [Burkholderia pseudomallei K96243] [TssK]
ATGAGCTGGCATAACAAGGTCGTCTGGAGCGAGGGGCTTTTCATGCGCCCGCAGCTGTTCCAGCAGCAGGAGCGCTATCT
CGAGCACTACGCGCACAAGCGCGCGGCACCGCTGTCGCCGTTCTTCTTCGGCTTCAGCCACTTCAGCCTCGACAGCGAGG
CGCCGGCGCTCGGCAAGATCATCGTGAAATCGGCGAGCGGCGTGTTCGCCGACGGCACGCCGTTCGACGCGCCGGGCAGC
ACGCCGCCGCCCGCGCCGCTCACGATCCGGCCCGAGCATCTGGACCAGGTGATCTACCTCGCGGTGCCGATCCGCGTGCC
GAACGGCGAGGAAACCGCATTCGACCGCGCGGCCGAATCGCTCGCGCGCTATGCCGTGTTCGAAACCGACCTGCGCGACA
CGAACTCGATCGGGCAAGGGCCGAAGACGGTCCAGTTGTCGAACCTGCGCCTGCGGCTGCTTCCGGAAAAGGAACTGACG
GACGCGTGGATCGGGCTCGCGCTCACGCGCGTGAAGACGATTCGCGCGGACGCGAGCATCGAGCTCGACGACATGCTGAT
TCCGCCCGTGGTCGGCTACGGCGCGAGCGACACGCTCGCGAGCTGGCTCGCGAAGATCCACGATCTCACGCGCCTGCGCG
CGAACGCGCTCGCCGAGCGCCTGACGGGCTCGGACGGCCGGGCGGGCACGACGGCCGAAGTATCCGACTACCTGCTGCTG
CAAACGCTCAATCGCTACGAGCCGCTGCTGAAACACCTGCAGCGCGTGCCCACGACGTCGCCCGCCGAGCTGTACGCGCT
GCTCATCGGCATGGCGGGCGAGCTGTCCACCTACGTGCGCACCGATACGCGCCGGCCGCTCGATACGCACCCGCCCTATC
AGCACGTCGCGCCGCATCTGTGCCTGAAGCCCGTCGTCGACGACACGCACCGGCTGCTCAACGCCGTGCTCGTGCGCAGC
GCGCAGCGCCTCGCGCTCGCCGATCTGGGGCACGGAATGCTCAACGCGGTCGTCGATCCGGTCGACATGCAGGGCTTCAC
CGCGGTCGTGCTCGCGGTGCATGCGCAGATGCCGCCCGATCTGCTGCAGCAGCAGTTCGCCGCGCAGGCGAAGGCGGGGC
CGTCCGAGCGGCTGCCGGACCTCGTGCGCAGCCATCTGTCCGGCATCGCGCTGCAGGCGCTGCCGGTGCCGCCCCGGCAG
ATCCCGTTCAACGCCGGCTACGTCTATTACGAGCTCGCGCGCGGCGGGCCGCTGTGGGACGAAGTCGCGCGGCACGGCGG
GCTCGCGCTGCACATCGCCGGCGAATTTCCGTCGCTGAAGCTCGAGCTATGGGGCATTCGCGGATAG