Detailed information of component protein
Summary
| Component ID | T6CP012712 |
| Component protein type | TagJ |
| T6SS ID (Type) | T6SS00073  (Type i3) |
| Strain | Burkholderia pseudomallei K96243 |
| Replicon | chromosome II |
| Sequence | Protein sequence (322 a.a.); Nucleotide sequence (966 bp) |
| Reference |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | BPS_RS19540 |
| Coordinate (Strand) | 235775..236740 (+) |
| NCBI ID | WP_011205359.1 |
| RefSeq | NC_006351 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| ImpE | PF07024.15 | 1.2e-48 | 149..293 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-321 | MTTPAFPAPPGARTSARPHDTLLDARLAAAQAAVRARPVDAASRWALFQLLCVTGQWERAVGQLQAYARFAAQHAHIAHAYRDLIRAERFRARVMAGQARPGFVFDAPPWIDDLLEALRAQAAGARDEADRARSRALDRAPFVAGRGPDAPFDWIADSDSRFGPVCEVVTAGHDRWLPFSDLAGWRLARPGVLLALVWAPCVLTLADGSVAHGFMPARYPGSELADGGGAPGASAAAHEADAHESAAREADALRLGSRTAWRDVGRTGVFALGRKTWSTSAGDAGLFELHACEFGARARAGAVLGGAAREARGGEAADGCA |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.8908 | - | - |
Protein sequence: 322 a.a.
>T6CP012712 NC_006351:235775-236740 [Burkholderia pseudomallei K96243] [TagJ]
MTTPAFPAPPGARTSARPHDTLLDARLAAAQAAVRARPVDAASRWALFQLLCVTGQWERAVGQLQAYARFAAQHAHIAHA
YRDLIRAERFRARVMAGQARPGFVFDAPPWIDDLLEALRAQAAGARDEADRARSRALDRAPFVAGRGPDAPFDWIADSDS
RFGPVCEVVTAGHDRWLPFSDLAGWRLARPGVLLALVWAPCVLTLADGSVAHGFMPARYPGSELADGGGAPGASAAAHEA
DAHESAAREADALRLGSRTAWRDVGRTGVFALGRKTWSTSAGDAGLFELHACEFGARARAGAVLGGAAREARGGEAADGC
A*
MTTPAFPAPPGARTSARPHDTLLDARLAAAQAAVRARPVDAASRWALFQLLCVTGQWERAVGQLQAYARFAAQHAHIAHA
YRDLIRAERFRARVMAGQARPGFVFDAPPWIDDLLEALRAQAAGARDEADRARSRALDRAPFVAGRGPDAPFDWIADSDS
RFGPVCEVVTAGHDRWLPFSDLAGWRLARPGVLLALVWAPCVLTLADGSVAHGFMPARYPGSELADGGGAPGASAAAHEA
DAHESAAREADALRLGSRTAWRDVGRTGVFALGRKTWSTSAGDAGLFELHACEFGARARAGAVLGGAAREARGGEAADGC
A*
Nucleotide sequence: 966 bp
>T6CP012712 NC_006351:235775-236740 [Burkholderia pseudomallei K96243] [TagJ]
ATGACGACGCCTGCCTTCCCGGCGCCGCCCGGCGCGCGCACGTCGGCCCGGCCGCACGATACGCTGCTCGACGCGCGGCT
CGCGGCTGCGCAAGCCGCGGTGCGCGCCCGGCCCGTCGATGCGGCGAGCCGTTGGGCGCTGTTTCAACTGCTCTGCGTGA
CGGGCCAGTGGGAACGCGCCGTCGGGCAGTTGCAGGCTTATGCGCGGTTCGCCGCGCAGCACGCGCACATCGCGCACGCC
TATCGCGACCTGATTCGCGCCGAGCGCTTTCGCGCCCGCGTGATGGCGGGCCAGGCGCGGCCGGGATTCGTATTCGATGC
GCCGCCGTGGATCGACGATCTGCTGGAAGCGTTGCGCGCGCAGGCGGCCGGCGCGCGCGACGAAGCCGACCGCGCGCGTT
CGCGCGCGCTCGATCGCGCGCCGTTCGTCGCGGGGCGCGGGCCGGATGCGCCGTTCGACTGGATCGCCGACAGCGATTCG
CGATTCGGGCCGGTCTGCGAAGTCGTGACCGCCGGGCATGATCGTTGGCTGCCGTTTTCGGATCTGGCCGGATGGCGGCT
CGCGCGCCCGGGCGTGCTGCTCGCTCTGGTCTGGGCGCCGTGCGTGCTCACGCTTGCCGACGGCAGTGTCGCGCACGGCT
TCATGCCGGCGCGTTACCCGGGCTCCGAACTGGCCGACGGGGGCGGCGCGCCGGGCGCCTCAGCGGCCGCGCACGAGGCC
GATGCGCACGAGAGCGCCGCGCGCGAGGCCGATGCGTTGCGGCTCGGCAGCCGGACCGCATGGCGCGACGTCGGCCGCAC
CGGCGTGTTCGCGCTCGGCCGCAAGACCTGGTCGACGAGCGCGGGCGACGCCGGCCTTTTCGAGCTGCACGCGTGTGAAT
TCGGCGCGCGCGCCCGTGCGGGCGCCGTGCTCGGCGGCGCGGCGCGCGAAGCGCGCGGCGGGGAGGCGGCCGATGGATGC
GCATGA
ATGACGACGCCTGCCTTCCCGGCGCCGCCCGGCGCGCGCACGTCGGCCCGGCCGCACGATACGCTGCTCGACGCGCGGCT
CGCGGCTGCGCAAGCCGCGGTGCGCGCCCGGCCCGTCGATGCGGCGAGCCGTTGGGCGCTGTTTCAACTGCTCTGCGTGA
CGGGCCAGTGGGAACGCGCCGTCGGGCAGTTGCAGGCTTATGCGCGGTTCGCCGCGCAGCACGCGCACATCGCGCACGCC
TATCGCGACCTGATTCGCGCCGAGCGCTTTCGCGCCCGCGTGATGGCGGGCCAGGCGCGGCCGGGATTCGTATTCGATGC
GCCGCCGTGGATCGACGATCTGCTGGAAGCGTTGCGCGCGCAGGCGGCCGGCGCGCGCGACGAAGCCGACCGCGCGCGTT
CGCGCGCGCTCGATCGCGCGCCGTTCGTCGCGGGGCGCGGGCCGGATGCGCCGTTCGACTGGATCGCCGACAGCGATTCG
CGATTCGGGCCGGTCTGCGAAGTCGTGACCGCCGGGCATGATCGTTGGCTGCCGTTTTCGGATCTGGCCGGATGGCGGCT
CGCGCGCCCGGGCGTGCTGCTCGCTCTGGTCTGGGCGCCGTGCGTGCTCACGCTTGCCGACGGCAGTGTCGCGCACGGCT
TCATGCCGGCGCGTTACCCGGGCTCCGAACTGGCCGACGGGGGCGGCGCGCCGGGCGCCTCAGCGGCCGCGCACGAGGCC
GATGCGCACGAGAGCGCCGCGCGCGAGGCCGATGCGTTGCGGCTCGGCAGCCGGACCGCATGGCGCGACGTCGGCCGCAC
CGGCGTGTTCGCGCTCGGCCGCAAGACCTGGTCGACGAGCGCGGGCGACGCCGGCCTTTTCGAGCTGCACGCGTGTGAAT
TCGGCGCGCGCGCCCGTGCGGGCGCCGTGCTCGGCGGCGCGGCGCGCGAAGCGCGCGGCGGGGAGGCGGCCGATGGATGC
GCATGA