Detailed information of component protein


Summary

Component ID T6CP000647
Component protein type TssF
T6SS ID (Type) T6SS00073 insolico (Type i3)
Strain Burkholderia pseudomallei K96243
Replicon chromosome II
Sequence Protein sequence (630 a.a.); Nucleotide sequence (1890 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) BPS_RS19550
Coordinate (Strand) 237339..239228 (+)
NCBI ID WP_004523549.1
RefSeq NC_006351
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 1.9e-231 2..626
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-629 VDPQLLDYYNQELIYMRELGAEFARAHPKIARRLGMQAGEVADPYVERLIESFCFMAARMQIKLDAEFPRFTGRLLEVLYPNYVAPTPSMAVARLYPSRTEGNLAQGFRVARGTAFAARVPAGEKTACRFRSGQDVTLYPLEIADARLTGIPPDIPALDRYVPAGAQVRGALRLRLRTTGNMRIADLRGLDRLPLYLAGDAQVASHLFELLHVAGVATLTAAPGEFAAPGRPPAAVTVDALAHEGLGADEGLLPLTWAKFHGHNLLHEYFACPERFYFVALTGLEEGLRRIAGSEVEIVVLLEQSPERLADVVDASRFALFCTPVINLFPRHMDRIELSSGQTECHLVPARLAPLDYEVFSVEAMYGQVAATSAELEFRPLYQTLNDDESNYGRYFSTRRERRLVSDFARRYGTRTPYVGTEMFVSLVDQNEAPYSEDIRYLSVDALVTNRDLPSLVPRDGVRDLTAIESAPIDSVGLIRAPSAPKAPYAEREIAWRLIRQLNFNYLPLDELDHRAGGQGLRGLLRLFLAGDEADSRRQVESLVGVKTRPVTRKLPGAGPLVFGRGVECALSVDETGFSGVSPYLFGLVLEHYLARHVSINVFTQTELNSIQRGRIARWPVRMGARGGA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9952 - -


  Protein sequence: 630 a.a.    

>T6CP000647 NC_006351:237339-239228 [Burkholderia pseudomallei K96243] [TssF]
VDPQLLDYYNQELIYMRELGAEFARAHPKIARRLGMQAGEVADPYVERLIESFCFMAARMQIKLDAEFPRFTGRLLEVLY
PNYVAPTPSMAVARLYPSRTEGNLAQGFRVARGTAFAARVPAGEKTACRFRSGQDVTLYPLEIADARLTGIPPDIPALDR
YVPAGAQVRGALRLRLRTTGNMRIADLRGLDRLPLYLAGDAQVASHLFELLHVAGVATLTAAPGEFAAPGRPPAAVTVDA
LAHEGLGADEGLLPLTWAKFHGHNLLHEYFACPERFYFVALTGLEEGLRRIAGSEVEIVVLLEQSPERLADVVDASRFAL
FCTPVINLFPRHMDRIELSSGQTECHLVPARLAPLDYEVFSVEAMYGQVAATSAELEFRPLYQTLNDDESNYGRYFSTRR
ERRLVSDFARRYGTRTPYVGTEMFVSLVDQNEAPYSEDIRYLSVDALVTNRDLPSLVPRDGVRDLTAIESAPIDSVGLIR
APSAPKAPYAEREIAWRLIRQLNFNYLPLDELDHRAGGQGLRGLLRLFLAGDEADSRRQVESLVGVKTRPVTRKLPGAGP
LVFGRGVECALSVDETGFSGVSPYLFGLVLEHYLARHVSINVFTQTELNSIQRGRIARWPVRMGARGGA*

  Nucleotide sequence: 1890 bp    

>T6CP000647 NC_006351:237339-239228 [Burkholderia pseudomallei K96243] [TssF]
GTGGACCCGCAATTGCTCGACTACTACAACCAGGAACTGATCTACATGCGCGAGCTCGGCGCCGAGTTCGCGCGCGCGCA
CCCGAAGATTGCGCGGCGCCTCGGAATGCAGGCGGGCGAAGTGGCCGATCCGTACGTCGAGCGGCTGATCGAATCGTTCT
GCTTTATGGCCGCGCGCATGCAGATCAAGCTCGATGCGGAATTTCCGCGCTTCACCGGCCGCCTGCTCGAGGTGCTCTAT
CCGAACTATGTCGCGCCGACGCCGTCGATGGCGGTCGCGCGCCTGTACCCGAGCCGCACCGAAGGCAACCTCGCGCAAGG
CTTTCGCGTCGCGCGCGGCACCGCGTTTGCCGCGCGCGTGCCGGCCGGCGAGAAAACCGCGTGCCGGTTTCGCAGCGGCC
AGGACGTGACGCTCTATCCGCTCGAGATCGCCGACGCGCGGCTGACGGGGATTCCGCCGGACATCCCGGCGCTCGACCGC
TACGTGCCGGCCGGCGCGCAGGTGCGCGGCGCGCTGCGCCTGCGGCTGCGCACGACCGGCAACATGCGCATCGCCGATCT
GCGGGGCCTCGACCGGCTGCCGCTGTATCTCGCGGGCGACGCTCAGGTGGCCTCGCACCTGTTCGAGCTGCTGCACGTGG
CCGGCGTCGCGACGCTCACGGCCGCGCCCGGCGAGTTCGCCGCGCCAGGCCGCCCGCCCGCGGCGGTTACCGTCGACGCG
CTCGCTCACGAAGGGCTCGGCGCCGACGAGGGGCTGTTGCCGCTCACGTGGGCGAAGTTCCATGGGCACAACCTGCTGCA
CGAATACTTCGCGTGCCCGGAGCGCTTCTATTTCGTCGCGCTGACGGGGCTCGAGGAAGGGTTGCGGCGCATCGCGGGCA
GCGAGGTCGAAATCGTCGTGCTGCTCGAACAATCGCCCGAGCGGCTCGCGGACGTCGTCGACGCGTCGCGCTTCGCGCTG
TTCTGCACGCCGGTGATCAACCTGTTTCCGCGCCACATGGACCGGATCGAACTGTCGAGCGGGCAGACCGAATGCCATCT
GGTGCCGGCCCGCCTCGCGCCGCTCGACTACGAAGTATTTTCCGTCGAGGCGATGTACGGGCAGGTCGCCGCGACATCGG
CCGAACTCGAGTTCCGGCCGCTGTACCAGACGCTGAACGACGACGAGAGCAACTATGGACGCTATTTCTCGACGCGGCGC
GAGCGCCGGCTCGTGTCGGATTTCGCGCGCCGCTACGGCACGCGCACGCCGTACGTCGGCACGGAGATGTTCGTATCGCT
CGTCGATCAGAACGAGGCGCCCTACAGCGAGGACATCCGCTATCTGTCGGTGGACGCGCTGGTGACGAACCGCGACCTGC
CGAGCCTCGTGCCGCGCGACGGCGTGCGCGACCTCACGGCGATCGAATCCGCGCCGATCGACAGCGTCGGCCTGATCCGC
GCGCCGTCCGCGCCGAAGGCGCCGTATGCGGAGCGCGAGATCGCGTGGCGGCTGATCCGCCAGTTGAACTTCAACTATCT
GCCGCTCGACGAGCTCGACCATCGCGCGGGCGGACAGGGCCTGCGCGGCCTGCTGCGGCTGTTTCTGGCGGGCGACGAGG
CCGACAGCCGGCGGCAGGTGGAAAGCCTTGTCGGCGTGAAGACGCGGCCCGTCACGCGCAAGCTGCCCGGCGCGGGCCCG
CTCGTGTTCGGGCGCGGCGTCGAGTGCGCGCTGAGCGTCGACGAAACGGGCTTCTCCGGCGTGAGCCCGTATCTGTTCGG
GCTCGTGCTCGAGCATTATCTGGCGCGGCACGTGTCGATCAACGTGTTCACGCAGACCGAGCTGAACTCGATCCAGCGCG
GCCGCATCGCGCGCTGGCCGGTGCGCATGGGCGCGCGGGGAGGCGCGTGA