Detailed information of T6SS

Note: only experimentally validated proteins are displayed in the graph.


Summary

T6SS ID T6SS00068 insolico
T6SS type Type i3
Strain Burkholderia mallei ATCC 23344
Replicon (RefSeq) chromosome II (NC_006349)
Location 376517..411529
Function -
Comment -
References
[1] Schell MA et al (2007) Type VI secretion is a major virulence determinant in Burkholderia mallei. Mol Microbiol. 64(6):1466-85. [PudMed:17555434]
insolico Bioinformatics investigation has been performed.

T6SS components and genome coordinates

ComponentFHATssATssBTssCTssDTssETssFTssGTssHTssITssJTssKTssLTssM
Number11111111111111


Component ID Component Locus tag (Gene) Coordinate Strand Size (bp) NCBI ID Product
BMA_RS17920 371884..372825 - 942 WP_004190962.1 LysR family transcriptional regulator
BMA_RS17925 372922..374237 + 1316 pseudogene D-serine ammonia-lyase
BMA_RS17930 374408..375322 - 915 WP_004190523.1 LysR family transcriptional regulator
BMA_RS17935 375504..376208 + 705 WP_004190791.1 SDR family oxidoreductase
BMA_RS26115 376770..376946 - 177 WP_004190854.1 hypothetical protein
BMA_RS17940 376995..377312 - 318 WP_004205458.1 chorismate lyase
BMA_RS17945 377249..377494 - 246 WP_073699052.1 chorismate lyase
BMA_RS17950 377622..378857 - 1236 WP_038796415.1 flavin-dependent oxidoreductase
BMA_RS17955 379131..379316 - 186 WP_004190842.1 hypothetical protein
BMA_RS17960 379335..381233 + 1899 WP_004203280.1 DUF3857 and transglutaminase domain-containing protein
T6CP011466 FHA BMA_RS17965 (tagH) 381276..382712 - 1437 WP_004190504.1 type VI secretion system-associated FHA domain protein TagH
BMA_RS17970 382767..383168 - 402 WP_004190377.1 TssQ family T6SS-associated lipoprotein
T6CP000583 TssJ BMA_RS17975 (tssJ) 383808..384326 + 519 WP_004190712.1 type VI secretion system lipoprotein TssJ
T6CP000584 TssK BMA_RS17980 (tssK) 384323..385726 + 1404 WP_004190585.1 type VI secretion system baseplate subunit TssK
T6CP000585 TssL BMA_RS17985 385742..387058 + 1317 WP_004190689.1 DotU family type VI secretion system protein
T6CP000586 TssM BMA_RS17990 (tssM) 387061..390690 + 3630 WP_004190681.1 type VI secretion system membrane subunit TssM
BMA_RS17995 (tagF) 390687..391602 + 916 pseudogene type VI secretion system-associated protein TagF
BMA_RS18000 391587..391814 - 228 WP_004190273.1 hypothetical protein
BMA_RS18005 391813..394410 + 2598 WP_004190797.1 protein kinase
T6CP000587 TssA BMA_RS18010 (tssA) 394463..395542 + 1080 WP_004190988.1 type VI secretion system protein TssA
T6CP000588 TssB BMA_RS18015 (tssB) 395605..396183 + 579 WP_004190671.1 type VI secretion system contractile sheath small subunit
T6CP000589 TssC BMA_RS18020 (tssC) 396176..397684 + 1509 WP_004190849.1 type VI secretion system contractile sheath large subunit
T6CP000590 TssD BMA_RS18025 397744..398235 + 492 WP_004190698.1 type VI secretion system tube protein Hcp
T6CP000591 TssE BMA_RS18030 (tssE) 398254..398814 + 561 WP_004196148.1 type VI secretion system baseplate subunit TssE
T6CP000592 TssF BMA_RS18035 (tssF) 398819..400690 + 1872 WP_004190509.1 type VI secretion system baseplate subunit TssF
T6CP000593 TssG BMA_RS18040 (tssG) 400687..402177 + 1491 WP_004196149.1 type VI secretion system baseplate subunit TssG
T6CP000594 TssH BMA_RS18045 (tssH) 402156..404810 + 2655 WP_004190714.1 type VI secretion system ATPase TssH
T6CP000595 TssI BMA_RS18050 (tssI) 404807..407011 + 2205 WP_004203275.1 type VI secretion system tip protein VgrG
BMA_RS18055 407086..407739 + 654 WP_004196151.1 hypothetical protein
BMA_RS18060 407669..408727 + 1059 WP_004196154.1 RHS repeat protein
BMA_RS18065 408755..409875 - 1121 WP_038802950.1 IS3 family transposase
BMA_RS18070 409943..410536 - 594 pseudogene acyltransferase family protein
BMA_RS18075 410549..411529 - 981 WP_011204340.1 class I SAM-dependent methyltransferase
BMA_RS18080 412046..413470 + 1425 WP_004190776.1 cytosine permease
BMA_RS18085 413467..414405 + 939 WP_004190245.1 NAD-dependent protein deacetylase
BMA_RS18090 414368..415045 + 678 WP_004190461.1 DUF938 domain-containing protein
BMA_RS18095 415369..415512 - 144 WP_004190588.1 hypothetical protein
flank Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files

    

Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed.
Regulator ID Locus tag (Gene) Regulator type Regulatory pathway Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID Target (Regulation)

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed.
Effector ID Locus tag (Gene) Classification Cognate immunity protein Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed.
Immunity protein ID Locus tag (Gene) Cognate effector Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID

experimental Experimental investigation has been performed.
Accessory protein ID Locus tag (Gene) Type             Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID Related structure protein Related effector