Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS00068  |
| T6SS type | Type i3 |
| Strain | Burkholderia mallei ATCC 23344 |
| Replicon (RefSeq) | chromosome II (NC_006349) |
| Location | 376517..411529 |
| Function | - |
| Comment | - |
| References | [1] Schell MA et al (2007) Type VI secretion is a major virulence determinant in Burkholderia mallei. Mol Microbiol. 64(6):1466-85. [PudMed:17555434] |
Bioinformatics investigation has been performed.T6SS components and genome coordinates
| Component | FHA | TssA | TssB | TssC | TssD | TssE | TssF | TssG | TssH | TssI | TssJ | TssK | TssL | TssM |
| Number | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
Loading, please wait
Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| BMA_RS17920 | 371884..372825 | - | 942 | WP_004190962.1 | LysR family transcriptional regulator | ||
| BMA_RS17925 | 372922..374237 | + | 1316 | pseudogene | D-serine ammonia-lyase | ||
| BMA_RS17930 | 374408..375322 | - | 915 | WP_004190523.1 | LysR family transcriptional regulator | ||
| BMA_RS17935 | 375504..376208 | + | 705 | WP_004190791.1 | SDR family oxidoreductase | ||
| BMA_RS26115 | 376770..376946 | - | 177 | WP_004190854.1 | hypothetical protein | ||
| BMA_RS17940 | 376995..377312 | - | 318 | WP_004205458.1 | chorismate lyase | ||
| BMA_RS17945 | 377249..377494 | - | 246 | WP_073699052.1 | chorismate lyase | ||
| BMA_RS17950 | 377622..378857 | - | 1236 | WP_038796415.1 | flavin-dependent oxidoreductase | ||
| BMA_RS17955 | 379131..379316 | - | 186 | WP_004190842.1 | hypothetical protein | ||
| BMA_RS17960 | 379335..381233 | + | 1899 | WP_004203280.1 | DUF3857 and transglutaminase domain-containing protein |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed. Bioinformatics investigation has been performed.
Loading, please wait
Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|---|---|---|---|---|---|---|---|
| No matching records found | ||||||||
Experimental investigation has been performed. Bioinformatics investigation has been performed.
Loading, please wait
Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|---|
| No matching records found | |||||||
Experimental investigation has been performed. Bioinformatics investigation has been performed.
Loading, please wait
Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|
| No matching records found | ||||||
Experimental investigation has been performed.
Loading, please wait
Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
|---|---|---|---|---|---|---|---|---|
| No matching records found | ||||||||