Detailed information of component protein
Summary
Component ID | T6CP000590 |
Component protein type | TssD |
T6SS ID (Type) | T6SS00068 (Type i3) |
Strain | Burkholderia mallei ATCC 23344 |
Replicon | chromosome II |
Sequence | Protein sequence (164 a.a.); Nucleotide sequence (492 bp) |
Reference |
External database links
Locus tag (Gene) | BMA_RS18025 |
Coordinate (Strand) | 397744..398235 (+) |
NCBI ID | WP_004190698.1 |
RefSeq | NC_006349 |
Uniprot ID | - |
KEGG ID | - |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
T6SS_HCP | PF05638.14 | 1.7e-33 | 6..138 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-163 | MGVAMFMKVDGVTGESADAQHKGWTDIQSFSWGASQPGAMASGSGGNAGKASFNDLVVAAYMDKGATAIIKNCASGKHLPTVEISACKTGGSQIEFMRVTLQEVLVTSAQIAGVDPGDAADRLMMQYGFQAAKVKKQYWQQNDNGGKGAEVSVGWNIKENTEM |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9150 | - | - |
Protein sequence: 164 a.a.
>T6CP000590 NC_006349:397744-398235 [Burkholderia mallei ATCC 23344] [TssD]
MGVAMFMKVDGVTGESADAQHKGWTDIQSFSWGASQPGAMASGSGGNAGKASFNDLVVAAYMDKGATAIIKNCASGKHLP
TVEISACKTGGSQIEFMRVTLQEVLVTSAQIAGVDPGDAADRLMMQYGFQAAKVKKQYWQQNDNGGKGAEVSVGWNIKEN
TEM*
MGVAMFMKVDGVTGESADAQHKGWTDIQSFSWGASQPGAMASGSGGNAGKASFNDLVVAAYMDKGATAIIKNCASGKHLP
TVEISACKTGGSQIEFMRVTLQEVLVTSAQIAGVDPGDAADRLMMQYGFQAAKVKKQYWQQNDNGGKGAEVSVGWNIKEN
TEM*
Nucleotide sequence: 492 bp
>T6CP000590 NC_006349:397744-398235 [Burkholderia mallei ATCC 23344] [TssD]
ATGGGCGTCGCAATGTTTATGAAAGTGGACGGCGTCACCGGCGAATCGGCCGACGCGCAGCACAAGGGCTGGACCGACAT
CCAGTCGTTCTCATGGGGCGCGAGCCAGCCGGGCGCGATGGCGAGCGGCAGCGGCGGCAACGCGGGCAAGGCGAGCTTCA
ACGATCTCGTCGTCGCCGCGTACATGGACAAGGGCGCAACGGCGATCATCAAGAACTGCGCGAGCGGCAAGCACCTGCCG
ACGGTCGAGATATCGGCGTGCAAGACGGGCGGCTCGCAGATCGAGTTCATGCGCGTGACGCTGCAGGAAGTGCTCGTCAC
GTCCGCGCAGATCGCGGGCGTGGACCCGGGCGACGCGGCCGACCGGCTGATGATGCAGTACGGTTTTCAGGCCGCGAAGG
TCAAGAAGCAGTACTGGCAGCAGAACGACAACGGCGGCAAGGGCGCCGAAGTGTCGGTCGGCTGGAACATCAAGGAGAAC
ACCGAGATGTGA
ATGGGCGTCGCAATGTTTATGAAAGTGGACGGCGTCACCGGCGAATCGGCCGACGCGCAGCACAAGGGCTGGACCGACAT
CCAGTCGTTCTCATGGGGCGCGAGCCAGCCGGGCGCGATGGCGAGCGGCAGCGGCGGCAACGCGGGCAAGGCGAGCTTCA
ACGATCTCGTCGTCGCCGCGTACATGGACAAGGGCGCAACGGCGATCATCAAGAACTGCGCGAGCGGCAAGCACCTGCCG
ACGGTCGAGATATCGGCGTGCAAGACGGGCGGCTCGCAGATCGAGTTCATGCGCGTGACGCTGCAGGAAGTGCTCGTCAC
GTCCGCGCAGATCGCGGGCGTGGACCCGGGCGACGCGGCCGACCGGCTGATGATGCAGTACGGTTTTCAGGCCGCGAAGG
TCAAGAAGCAGTACTGGCAGCAGAACGACAACGGCGGCAAGGGCGCCGAAGTGTCGGTCGGCTGGAACATCAAGGAGAAC
ACCGAGATGTGA