Detailed information of component protein


Summary

Component ID T6CP011466
Component protein type FHA
T6SS ID (Type) T6SS00068 insolico (Type i3)
Strain Burkholderia mallei ATCC 23344
Replicon chromosome II
Sequence Protein sequence (479 a.a.); Nucleotide sequence (1437 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) BMA_RS17965
Coordinate (Strand) 381276..382712 (-)
NCBI ID WP_004190504.1
RefSeq NC_006349
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
FHA PF00498.28 3.5e-09 29..96
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-478 MQLTVIEHAGEPVGTDGRNAVVFHAPGGTIGRDSDNHLVLRDDTRQISRLQALLQVADDACLLKNLSSVSTIEVNRVPIGYAQAQRLNMGDIIRIGPYLLRAEPDDATIERTVEAAATAAAAAAPAASAAQAQAKGAGNKLWGLLHERFGLGKAQGAGEQSGARAAPARHHDSPASAAPRDLNQLSTDPLDLFAQPHGDPDARAGAAREGEGRAPPTVTQPDHAPEWTQHVRVQPAQSAPPAASRPGAPAARSGDIPAAGDASDMPSRVRASPAPAPATPETLLQAFFEGAGLDTAAEQHHWSAEQLFVAGQLLALFANGTVELLSSRSILKREVKADMTMLLDRENNPLKLLPNGSAVLRQMFGLPLPGFMTPQSAVSDAFQDLHAHQIGMVAGMRAALMDLLTRFSPQRLRERDAAPQWYEKRVPALYKARLWDRYATTHRDTLFAIEDDFASVFGKAFLSAYDAEVESYRGRCRR


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9905 - -


  Protein sequence: 479 a.a.    

>T6CP011466 NC_006349:c382712-381276 [Burkholderia mallei ATCC 23344] [FHA]
MQLTVIEHAGEPVGTDGRNAVVFHAPGGTIGRDSDNHLVLRDDTRQISRLQALLQVADDACLLKNLSSVSTIEVNRVPIG
YAQAQRLNMGDIIRIGPYLLRAEPDDATIERTVEAAATAAAAAAPAASAAQAQAKGAGNKLWGLLHERFGLGKAQGAGEQ
SGARAAPARHHDSPASAAPRDLNQLSTDPLDLFAQPHGDPDARAGAAREGEGRAPPTVTQPDHAPEWTQHVRVQPAQSAP
PAASRPGAPAARSGDIPAAGDASDMPSRVRASPAPAPATPETLLQAFFEGAGLDTAAEQHHWSAEQLFVAGQLLALFANG
TVELLSSRSILKREVKADMTMLLDRENNPLKLLPNGSAVLRQMFGLPLPGFMTPQSAVSDAFQDLHAHQIGMVAGMRAAL
MDLLTRFSPQRLRERDAAPQWYEKRVPALYKARLWDRYATTHRDTLFAIEDDFASVFGKAFLSAYDAEVESYRGRCRR*

  Nucleotide sequence: 1437 bp    

>T6CP011466 NC_006349:c382712-381276 [Burkholderia mallei ATCC 23344] [FHA]
ATGCAACTGACCGTTATCGAACACGCGGGCGAGCCGGTCGGCACCGACGGCCGCAACGCCGTCGTGTTTCATGCGCCGGG
CGGCACGATCGGCCGGGACAGCGACAATCACCTCGTGCTGCGCGACGACACCCGGCAAATCTCGCGCCTGCAGGCGCTGC
TGCAGGTGGCCGACGACGCGTGCCTGCTGAAGAACCTGAGCAGCGTATCGACGATCGAAGTGAACCGCGTGCCGATCGGC
TACGCGCAAGCGCAGCGCCTGAACATGGGCGACATCATCCGGATCGGCCCTTACCTGCTGCGCGCGGAGCCCGACGACGC
GACGATCGAGCGAACCGTCGAAGCCGCCGCCACGGCGGCCGCGGCGGCGGCGCCGGCGGCGTCCGCCGCGCAGGCTCAGG
CGAAGGGGGCGGGCAACAAACTGTGGGGCCTGCTGCACGAGCGCTTCGGGCTCGGCAAGGCACAGGGCGCGGGCGAGCAG
TCCGGCGCGCGCGCCGCGCCGGCGCGCCACCACGATTCGCCGGCGTCCGCCGCGCCGCGCGACCTGAATCAGCTGTCGAC
CGATCCGCTCGACCTGTTCGCGCAGCCGCACGGCGATCCGGATGCGCGAGCCGGCGCCGCGCGCGAAGGCGAAGGCCGCG
CGCCGCCCACCGTCACGCAACCGGATCACGCGCCCGAATGGACGCAACACGTCCGCGTGCAGCCGGCGCAATCCGCGCCG
CCCGCCGCCTCTCGCCCCGGCGCGCCCGCCGCGCGTTCGGGCGATATCCCCGCAGCGGGCGATGCGAGCGACATGCCGTC
GCGCGTGCGCGCGTCGCCGGCCCCCGCGCCGGCGACACCCGAGACATTGCTGCAGGCGTTCTTCGAAGGCGCGGGGCTCG
ACACCGCTGCCGAGCAGCATCACTGGTCCGCCGAGCAGTTGTTCGTCGCGGGGCAGCTGCTCGCGCTGTTCGCCAACGGC
ACGGTCGAGCTGCTGTCGTCACGCAGCATCCTGAAGCGCGAAGTGAAGGCCGACATGACGATGCTGCTCGACCGCGAGAA
CAATCCGCTGAAGCTGCTGCCGAACGGCAGCGCGGTGCTGCGCCAGATGTTCGGGCTGCCGCTGCCGGGCTTCATGACGC
CGCAAAGCGCCGTGTCCGACGCGTTCCAGGATCTGCACGCGCACCAGATCGGCATGGTGGCCGGCATGCGCGCCGCGCTG
ATGGATCTGCTCACGCGCTTCTCGCCGCAGCGCCTGCGCGAGCGCGACGCCGCGCCCCAGTGGTACGAGAAGCGCGTGCC
GGCGCTGTACAAGGCGCGCCTCTGGGACCGCTATGCAACCACGCATCGCGACACGCTGTTCGCGATCGAGGACGATTTCG
CCTCCGTGTTCGGCAAGGCGTTCCTCAGCGCCTACGACGCGGAAGTCGAGAGCTATCGCGGACGCTGCCGCCGGTGA