Detailed information of component protein


Summary

Component ID T6CP000593
Component protein type TssG
T6SS ID (Type) T6SS00068 insolico (Type i3)
Strain Burkholderia mallei ATCC 23344
Replicon chromosome II
Sequence Protein sequence (497 a.a.); Nucleotide sequence (1491 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) BMA_RS18040
Coordinate (Strand) 400687..402177 (+)
NCBI ID WP_004196149.1
RefSeq NC_006349
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 1e-115 83..442
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-496 MTTNPKPEPAGVDAGSHANSNAGRRAGAAANVEANAEPDAMPNAVRGAAADVAPSAAPSATPSATSQAAAARRDAWWRRLRAAPHGYDLFHALRWLDALSPEHAPSGYASRPRDEPVRFGQAPSLAFAAAMLADVRDDGPRPRVAIHGFGLFGPNGPLPSHLTEYAYERATQHDDPTFAAFADLFHHRLILLFYRAWADAQPTVSLDRPARARFDRYVASLIGPCDALLADSPRGSRPDSSFASSSDSLPDSLPDSLPDSPPDSSPDSPPDSRSDSPSDARLDPHPDSPRGAGALAPHAKYHQAGHLVRHTRNPEGLVQILRRYFGVRVRIVEHVPHWVMLDRAQRCAIRATRPTQPLGGAVLGRAVRDAQSRFRIVLGPLTLDEYRRFLPGGVHARQLAQWVREYVGIEFDWDVQLELARGEVPTLALGSRHGLGRTAWLGERLDPGPARDLVLGYDERMRASRARSGAADQAAAAGALIANLPEREPPCPISAE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.7223 - -


  Protein sequence: 497 a.a.    

>T6CP000593 NC_006349:400687-402177 [Burkholderia mallei ATCC 23344] [TssG]
MTTNPKPEPAGVDAGSHANSNAGRRAGAAANVEANAEPDAMPNAVRGAAADVAPSAAPSATPSATSQAAAARRDAWWRRL
RAAPHGYDLFHALRWLDALSPEHAPSGYASRPRDEPVRFGQAPSLAFAAAMLADVRDDGPRPRVAIHGFGLFGPNGPLPS
HLTEYAYERATQHDDPTFAAFADLFHHRLILLFYRAWADAQPTVSLDRPARARFDRYVASLIGPCDALLADSPRGSRPDS
SFASSSDSLPDSLPDSLPDSPPDSSPDSPPDSRSDSPSDARLDPHPDSPRGAGALAPHAKYHQAGHLVRHTRNPEGLVQI
LRRYFGVRVRIVEHVPHWVMLDRAQRCAIRATRPTQPLGGAVLGRAVRDAQSRFRIVLGPLTLDEYRRFLPGGVHARQLA
QWVREYVGIEFDWDVQLELARGEVPTLALGSRHGLGRTAWLGERLDPGPARDLVLGYDERMRASRARSGAADQAAAAGAL
IANLPEREPPCPISAE*

  Nucleotide sequence: 1491 bp    

>T6CP000593 NC_006349:400687-402177 [Burkholderia mallei ATCC 23344] [TssG]
ATGACGACGAACCCGAAACCGGAGCCCGCCGGCGTGGACGCGGGCTCGCACGCGAACTCGAATGCGGGCCGGCGCGCCGG
TGCGGCCGCGAATGTGGAGGCGAACGCGGAGCCGGACGCGATGCCGAATGCAGTCCGGGGCGCGGCTGCGGATGTCGCGC
CAAGCGCGGCGCCGAGCGCGACGCCGAGCGCGACGTCGCAGGCCGCCGCCGCGCGCCGCGACGCATGGTGGCGCCGCCTG
CGCGCCGCGCCGCACGGCTACGACCTGTTTCATGCGCTGCGTTGGCTCGATGCGCTGTCGCCCGAGCACGCGCCGTCCGG
CTACGCGTCGCGGCCGCGCGACGAGCCGGTGCGCTTCGGCCAGGCGCCGTCGCTCGCGTTCGCGGCCGCGATGCTCGCCG
ACGTGCGTGACGACGGCCCGCGCCCGCGCGTCGCGATTCACGGCTTCGGGCTGTTCGGGCCGAACGGGCCGCTGCCGTCG
CATCTGACCGAGTACGCATACGAGCGCGCGACGCAGCATGACGATCCGACCTTCGCCGCGTTCGCCGACCTGTTTCATCA
TCGGCTGATCCTGCTGTTCTATCGCGCATGGGCCGATGCGCAGCCGACCGTCAGCCTCGATCGGCCGGCGCGCGCGCGGT
TCGACCGCTACGTGGCCAGCCTGATCGGGCCGTGCGACGCGTTGCTTGCCGATTCACCGCGCGGCTCACGGCCCGATTCG
TCCTTCGCTTCGTCGTCCGATTCACTGCCTGATTCACTGCCTGATTCACTGCCTGATTCACCGCCTGATTCATCGCCTGA
TTCGCCGCCTGATTCGCGGTCCGATTCGCCGTCCGATGCGCGCCTCGATCCGCATCCCGACTCGCCGCGCGGCGCTGGCG
CGCTCGCGCCGCACGCGAAGTATCACCAGGCCGGCCATCTGGTGCGGCACACGCGCAACCCGGAGGGGCTCGTGCAGATC
CTGCGGCGCTATTTCGGTGTGCGGGTACGCATCGTCGAGCACGTGCCGCACTGGGTGATGCTCGATCGCGCGCAGCGCTG
CGCGATCCGCGCGACGCGGCCGACGCAGCCGCTCGGCGGCGCCGTGCTCGGCCGTGCGGTGCGCGACGCGCAGTCGCGCT
TCCGGATCGTGCTCGGCCCGCTGACGCTCGACGAATACCGGCGGTTCCTGCCGGGCGGCGTCCATGCGCGGCAGCTCGCG
CAATGGGTGCGCGAATACGTCGGCATCGAATTCGACTGGGACGTGCAGCTCGAGCTCGCGCGCGGCGAAGTGCCGACGCT
CGCGCTCGGTAGCCGTCACGGGCTCGGCCGCACCGCATGGCTCGGCGAGCGGCTCGACCCCGGCCCCGCGCGCGACCTCG
TGCTCGGCTACGACGAGCGCATGCGCGCTTCGCGCGCACGATCGGGCGCGGCCGATCAGGCGGCCGCCGCCGGTGCGTTG
ATCGCCAACCTGCCTGAACGGGAACCGCCATGTCCGATATCGGCCGAGTGA