Detailed information of component protein
Summary
Component ID | T6CP000592 |
Component protein type | TssF |
T6SS ID (Type) | T6SS00068 (Type i3) |
Strain | Burkholderia mallei ATCC 23344 |
Replicon | chromosome II |
Sequence | Protein sequence (624 a.a.); Nucleotide sequence (1872 bp) |
Reference |
External database links
Locus tag (Gene) | BMA_RS18035 |
Coordinate (Strand) | 398819..400690 (+) |
NCBI ID | WP_004190509.1 |
RefSeq | NC_006349 |
Uniprot ID | - |
KEGG ID | - |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
T6SS_TssF | PF05947.14 | 2.8e-238 | 1..620 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-623 | MDTRLLDYYNRELAYLRELGGEFAQQFPKVAARLRMHESGPPDPYVERLLEGFSFLTARVQLKMDAEFPRFTQALLDAVYPGYVAPLPSMAIVQFTPMMNEGSLAQGYRLPAGTALRARPAAAEQTACEFRTAHDLTLWPLELADASVTGAPAYLPRSATAARRDVRGALRIRLKARGGAGLAQLPIDRLMFHLAGPERDALHLLELIAGHTIGVVCHDAAQPPRWLHALGAHALAHQGFDADQALLPDEGRSFHGYRLLREYFAFPARFLFFSIEGLRPALARATGDTFELTLLLDRHDAALENSVDARHLALNCTPAVNLFARRADRIPVHPGAREHHVVVDRSRPLDYEVYAVRRLAGEQRDDGQTRAFRPFHASFAGDGGNYGAYYTVRREPRLVSAQARANGTRTGYVGSETFVSLVDSACAPYDESIRYLSVDTLCTNRDLVLLLPAGDANAFTLRVSAPVERIAMIRGPSRPRPPLADAQSAWRLVSHLGLARHTLTDVDDEEGARVLRELLGLHADPADAAMRRQIDGVHRVAFAPVFRRLPAAGPLMFGRGVQVDVTVDDHAFSGDSPYLLGAVLEQFFARHVSINSFAECVLSSAQRGRLAQWPARVGRRPAI |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9956 | - | - |
Protein sequence: 624 a.a.
>T6CP000592 NC_006349:398819-400690 [Burkholderia mallei ATCC 23344] [TssF]
MDTRLLDYYNRELAYLRELGGEFAQQFPKVAARLRMHESGPPDPYVERLLEGFSFLTARVQLKMDAEFPRFTQALLDAVY
PGYVAPLPSMAIVQFTPMMNEGSLAQGYRLPAGTALRARPAAAEQTACEFRTAHDLTLWPLELADASVTGAPAYLPRSAT
AARRDVRGALRIRLKARGGAGLAQLPIDRLMFHLAGPERDALHLLELIAGHTIGVVCHDAAQPPRWLHALGAHALAHQGF
DADQALLPDEGRSFHGYRLLREYFAFPARFLFFSIEGLRPALARATGDTFELTLLLDRHDAALENSVDARHLALNCTPAV
NLFARRADRIPVHPGAREHHVVVDRSRPLDYEVYAVRRLAGEQRDDGQTRAFRPFHASFAGDGGNYGAYYTVRREPRLVS
AQARANGTRTGYVGSETFVSLVDSACAPYDESIRYLSVDTLCTNRDLVLLLPAGDANAFTLRVSAPVERIAMIRGPSRPR
PPLADAQSAWRLVSHLGLARHTLTDVDDEEGARVLRELLGLHADPADAAMRRQIDGVHRVAFAPVFRRLPAAGPLMFGRG
VQVDVTVDDHAFSGDSPYLLGAVLEQFFARHVSINSFAECVLSSAQRGRLAQWPARVGRRPAI*
MDTRLLDYYNRELAYLRELGGEFAQQFPKVAARLRMHESGPPDPYVERLLEGFSFLTARVQLKMDAEFPRFTQALLDAVY
PGYVAPLPSMAIVQFTPMMNEGSLAQGYRLPAGTALRARPAAAEQTACEFRTAHDLTLWPLELADASVTGAPAYLPRSAT
AARRDVRGALRIRLKARGGAGLAQLPIDRLMFHLAGPERDALHLLELIAGHTIGVVCHDAAQPPRWLHALGAHALAHQGF
DADQALLPDEGRSFHGYRLLREYFAFPARFLFFSIEGLRPALARATGDTFELTLLLDRHDAALENSVDARHLALNCTPAV
NLFARRADRIPVHPGAREHHVVVDRSRPLDYEVYAVRRLAGEQRDDGQTRAFRPFHASFAGDGGNYGAYYTVRREPRLVS
AQARANGTRTGYVGSETFVSLVDSACAPYDESIRYLSVDTLCTNRDLVLLLPAGDANAFTLRVSAPVERIAMIRGPSRPR
PPLADAQSAWRLVSHLGLARHTLTDVDDEEGARVLRELLGLHADPADAAMRRQIDGVHRVAFAPVFRRLPAAGPLMFGRG
VQVDVTVDDHAFSGDSPYLLGAVLEQFFARHVSINSFAECVLSSAQRGRLAQWPARVGRRPAI*
Nucleotide sequence: 1872 bp
>T6CP000592 NC_006349:398819-400690 [Burkholderia mallei ATCC 23344] [TssF]
ATGGATACGCGCCTGCTCGACTACTACAACCGCGAGCTCGCGTATCTGCGCGAGTTGGGCGGCGAGTTCGCGCAGCAGTT
TCCGAAAGTGGCCGCGCGCCTGCGGATGCACGAATCGGGGCCGCCCGATCCGTACGTCGAGCGGTTGCTCGAAGGCTTCA
GCTTTCTCACCGCGCGCGTGCAACTGAAGATGGACGCGGAGTTTCCGCGCTTCACGCAGGCGCTGCTCGACGCGGTGTAT
CCGGGTTACGTCGCGCCGCTTCCGTCGATGGCGATCGTGCAGTTCACGCCGATGATGAACGAAGGCAGCCTCGCGCAGGG
CTACCGGCTGCCGGCGGGCACCGCGCTGCGCGCGCGGCCCGCCGCGGCCGAACAGACCGCGTGCGAGTTTCGCACCGCGC
ACGATCTGACGCTGTGGCCGCTGGAGCTCGCGGACGCTTCGGTGACGGGCGCGCCCGCGTATCTGCCGCGTTCGGCGACG
GCAGCGCGCCGCGACGTGCGCGGCGCGCTGCGCATCCGGCTGAAGGCGCGCGGCGGCGCGGGCCTCGCGCAACTGCCGAT
CGATCGGCTGATGTTCCACCTGGCGGGCCCCGAGCGCGACGCGCTGCATCTGCTCGAACTGATCGCCGGGCATACGATCG
GCGTCGTCTGCCACGACGCGGCGCAGCCGCCGCGCTGGCTGCACGCGCTTGGCGCGCACGCGCTCGCGCATCAGGGCTTC
GACGCCGATCAGGCGCTGCTGCCCGACGAAGGCCGCAGCTTCCACGGTTACCGGCTGCTGCGCGAGTACTTCGCGTTTCC
CGCGCGCTTCCTGTTCTTCAGCATCGAAGGATTGCGGCCCGCGCTCGCGCGCGCGACGGGCGACACGTTCGAGCTGACGC
TGCTGCTCGATCGGCACGACGCGGCGCTCGAGAACAGCGTCGATGCGCGGCACCTCGCGTTGAACTGCACGCCGGCCGTC
AACCTGTTCGCGCGGCGCGCGGACCGCATTCCGGTCCATCCGGGCGCGCGCGAGCATCATGTCGTCGTCGATCGCAGCCG
GCCGCTCGACTACGAGGTCTACGCGGTGCGGCGGCTCGCGGGCGAGCAGCGCGACGACGGGCAGACGCGCGCGTTCCGGC
CGTTCCATGCGTCGTTCGCGGGCGACGGCGGCAATTACGGCGCGTACTACACGGTGCGCCGCGAGCCGCGCCTCGTGTCC
GCGCAGGCGCGCGCGAACGGCACGCGCACCGGCTACGTCGGCAGCGAGACGTTCGTGTCGCTCGTCGATAGCGCGTGCGC
GCCGTATGACGAATCGATCCGCTATCTGTCCGTCGACACGCTGTGCACGAACCGCGATCTCGTCCTGCTGTTGCCGGCGG
GCGACGCGAACGCGTTCACGCTGCGCGTGTCGGCGCCCGTCGAGCGGATCGCCATGATCCGCGGGCCGTCGCGGCCGCGC
CCGCCGCTCGCCGACGCGCAGAGCGCGTGGCGGCTCGTGAGCCATCTCGGGCTCGCGCGCCACACGCTGACCGATGTCGA
CGACGAAGAAGGCGCGCGCGTGCTGCGCGAATTGCTCGGCCTGCACGCGGACCCGGCCGATGCGGCGATGCGCCGGCAGA
TCGACGGTGTGCATCGCGTCGCGTTCGCGCCGGTGTTTCGCCGGCTGCCCGCCGCCGGGCCGCTGATGTTCGGGCGCGGC
GTGCAGGTGGACGTGACCGTCGACGATCATGCGTTTTCCGGCGACAGCCCCTATTTGCTCGGTGCGGTGCTCGAGCAGTT
TTTCGCGCGGCACGTGTCGATCAACTCGTTCGCCGAATGCGTGCTGAGCAGCGCGCAGCGCGGCAGGCTCGCGCAATGGC
CGGCGCGCGTCGGCAGGCGGCCCGCGATATGA
ATGGATACGCGCCTGCTCGACTACTACAACCGCGAGCTCGCGTATCTGCGCGAGTTGGGCGGCGAGTTCGCGCAGCAGTT
TCCGAAAGTGGCCGCGCGCCTGCGGATGCACGAATCGGGGCCGCCCGATCCGTACGTCGAGCGGTTGCTCGAAGGCTTCA
GCTTTCTCACCGCGCGCGTGCAACTGAAGATGGACGCGGAGTTTCCGCGCTTCACGCAGGCGCTGCTCGACGCGGTGTAT
CCGGGTTACGTCGCGCCGCTTCCGTCGATGGCGATCGTGCAGTTCACGCCGATGATGAACGAAGGCAGCCTCGCGCAGGG
CTACCGGCTGCCGGCGGGCACCGCGCTGCGCGCGCGGCCCGCCGCGGCCGAACAGACCGCGTGCGAGTTTCGCACCGCGC
ACGATCTGACGCTGTGGCCGCTGGAGCTCGCGGACGCTTCGGTGACGGGCGCGCCCGCGTATCTGCCGCGTTCGGCGACG
GCAGCGCGCCGCGACGTGCGCGGCGCGCTGCGCATCCGGCTGAAGGCGCGCGGCGGCGCGGGCCTCGCGCAACTGCCGAT
CGATCGGCTGATGTTCCACCTGGCGGGCCCCGAGCGCGACGCGCTGCATCTGCTCGAACTGATCGCCGGGCATACGATCG
GCGTCGTCTGCCACGACGCGGCGCAGCCGCCGCGCTGGCTGCACGCGCTTGGCGCGCACGCGCTCGCGCATCAGGGCTTC
GACGCCGATCAGGCGCTGCTGCCCGACGAAGGCCGCAGCTTCCACGGTTACCGGCTGCTGCGCGAGTACTTCGCGTTTCC
CGCGCGCTTCCTGTTCTTCAGCATCGAAGGATTGCGGCCCGCGCTCGCGCGCGCGACGGGCGACACGTTCGAGCTGACGC
TGCTGCTCGATCGGCACGACGCGGCGCTCGAGAACAGCGTCGATGCGCGGCACCTCGCGTTGAACTGCACGCCGGCCGTC
AACCTGTTCGCGCGGCGCGCGGACCGCATTCCGGTCCATCCGGGCGCGCGCGAGCATCATGTCGTCGTCGATCGCAGCCG
GCCGCTCGACTACGAGGTCTACGCGGTGCGGCGGCTCGCGGGCGAGCAGCGCGACGACGGGCAGACGCGCGCGTTCCGGC
CGTTCCATGCGTCGTTCGCGGGCGACGGCGGCAATTACGGCGCGTACTACACGGTGCGCCGCGAGCCGCGCCTCGTGTCC
GCGCAGGCGCGCGCGAACGGCACGCGCACCGGCTACGTCGGCAGCGAGACGTTCGTGTCGCTCGTCGATAGCGCGTGCGC
GCCGTATGACGAATCGATCCGCTATCTGTCCGTCGACACGCTGTGCACGAACCGCGATCTCGTCCTGCTGTTGCCGGCGG
GCGACGCGAACGCGTTCACGCTGCGCGTGTCGGCGCCCGTCGAGCGGATCGCCATGATCCGCGGGCCGTCGCGGCCGCGC
CCGCCGCTCGCCGACGCGCAGAGCGCGTGGCGGCTCGTGAGCCATCTCGGGCTCGCGCGCCACACGCTGACCGATGTCGA
CGACGAAGAAGGCGCGCGCGTGCTGCGCGAATTGCTCGGCCTGCACGCGGACCCGGCCGATGCGGCGATGCGCCGGCAGA
TCGACGGTGTGCATCGCGTCGCGTTCGCGCCGGTGTTTCGCCGGCTGCCCGCCGCCGGGCCGCTGATGTTCGGGCGCGGC
GTGCAGGTGGACGTGACCGTCGACGATCATGCGTTTTCCGGCGACAGCCCCTATTTGCTCGGTGCGGTGCTCGAGCAGTT
TTTCGCGCGGCACGTGTCGATCAACTCGTTCGCCGAATGCGTGCTGAGCAGCGCGCAGCGCGGCAGGCTCGCGCAATGGC
CGGCGCGCGTCGGCAGGCGGCCCGCGATATGA