Detailed information of component protein


Summary

Component ID T6CP000594
Component protein type TssH
T6SS ID (Type) T6SS00068 insolico (Type i3)
Strain Burkholderia mallei ATCC 23344
Replicon chromosome II
Sequence Protein sequence (885 a.a.); Nucleotide sequence (2655 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) BMA_RS18045
Coordinate (Strand) 402156..404810 (+)
NCBI ID WP_004190714.1
RefSeq NC_006349
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 4.2e-38 617..778
AAA_lid_9 PF17871.3 1e-28 372..459
ClpB_D2-small PF10431.11 3.6e-12 784..858
AAA PF00004.31 1.6e-09 230..331
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-884 MSDIGRVTLFGKLNTFLYETLEQATGFCRLRGNPYVELAHWLNQMLRRPDSDVHRILRRFDIDAAAIDRGIVSALDRLPRGAGSVSDLSAHIDDAIERAWVYATLKYDAAQIRGAVLLLALVKTPQLRNVLYAIARDFERIVPDVLADELERIVAGSPEAPSPAARAAAGAIGDAGAAPSAAREGSALARYAIDLTARARAGEIDPVVGRDGEIRQIVDILLRRRQNNPLLVGEAGVGKTAVAEGFALRIVAGDVPPPLRDVELYLLDIGLLQAGASVKGEFESRLRGVIDEASSSERPVILFIDEVHTLVGAGGAAGTGDAANLLKPALARGLLRTIGATTWSEYKQYIEKDPALTRRFQLVQVREPEEGAALAMLRGLAAKLEAHHRVLVLDDALQAAVTLSHRYIPARQLPDKAISLLDTACARVAVSQHAVPAPIEDVRRRIDSLRVERELIARECALGAGDAQRLDAIDASIAGEQTTLDALDARWQAERDALGKIVDWRASLLADDSSRVLDEAARADVQAKLSAALRALAELQGETPLVLPAVDTHAVAAVVSDWTGIPLGRMVRDEMQSVLKLAETLAERVVGQPHAVELIAERIQTARARLDDPAKSHGVFLLCGPSGVGKTETALALAEMLYGGEHNAITINMSEFQEAHTVSTLKGAPPGYVGYGQGGVLTEAVRRRPYSVVLLDEIEKAHRDVHEIFFQVFDKGWMEDGEGRYIDFRNTVILLTSNVGSERVMQLCRDPQRLPDAQTLTDALREVFPAALLGRLTVVPYYPLTDEMLARIVALQLARIERRIEAHHGIALRCADSATALIAERCRTIESGGRMVDAILTHTVLPRISQEILRATIEGRALRAIDVSAEDGQFVYRFEEEGAT


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9976 - -


  Protein sequence: 885 a.a.    

>T6CP000594 NC_006349:402156-404810 [Burkholderia mallei ATCC 23344] [TssH]
MSDIGRVTLFGKLNTFLYETLEQATGFCRLRGNPYVELAHWLNQMLRRPDSDVHRILRRFDIDAAAIDRGIVSALDRLPR
GAGSVSDLSAHIDDAIERAWVYATLKYDAAQIRGAVLLLALVKTPQLRNVLYAIARDFERIVPDVLADELERIVAGSPEA
PSPAARAAAGAIGDAGAAPSAAREGSALARYAIDLTARARAGEIDPVVGRDGEIRQIVDILLRRRQNNPLLVGEAGVGKT
AVAEGFALRIVAGDVPPPLRDVELYLLDIGLLQAGASVKGEFESRLRGVIDEASSSERPVILFIDEVHTLVGAGGAAGTG
DAANLLKPALARGLLRTIGATTWSEYKQYIEKDPALTRRFQLVQVREPEEGAALAMLRGLAAKLEAHHRVLVLDDALQAA
VTLSHRYIPARQLPDKAISLLDTACARVAVSQHAVPAPIEDVRRRIDSLRVERELIARECALGAGDAQRLDAIDASIAGE
QTTLDALDARWQAERDALGKIVDWRASLLADDSSRVLDEAARADVQAKLSAALRALAELQGETPLVLPAVDTHAVAAVVS
DWTGIPLGRMVRDEMQSVLKLAETLAERVVGQPHAVELIAERIQTARARLDDPAKSHGVFLLCGPSGVGKTETALALAEM
LYGGEHNAITINMSEFQEAHTVSTLKGAPPGYVGYGQGGVLTEAVRRRPYSVVLLDEIEKAHRDVHEIFFQVFDKGWMED
GEGRYIDFRNTVILLTSNVGSERVMQLCRDPQRLPDAQTLTDALREVFPAALLGRLTVVPYYPLTDEMLARIVALQLARI
ERRIEAHHGIALRCADSATALIAERCRTIESGGRMVDAILTHTVLPRISQEILRATIEGRALRAIDVSAEDGQFVYRFEE
EGAT*

  Nucleotide sequence: 2655 bp    

>T6CP000594 NC_006349:402156-404810 [Burkholderia mallei ATCC 23344] [TssH]
ATGTCCGATATCGGCCGAGTGACCTTGTTTGGAAAACTGAACACTTTTCTCTACGAGACCCTGGAGCAGGCGACCGGCTT
TTGTCGGCTGCGCGGCAATCCCTATGTCGAGCTCGCGCACTGGCTGAACCAGATGCTCCGGCGCCCGGACAGCGACGTGC
ACCGGATCCTGCGCCGCTTCGACATCGACGCGGCGGCGATCGACCGCGGGATCGTTTCGGCGCTCGACCGGCTGCCGCGC
GGCGCGGGTTCCGTGTCCGATCTGTCCGCGCACATCGATGATGCGATCGAACGCGCATGGGTGTACGCGACGCTCAAGTA
CGACGCGGCGCAGATTCGCGGCGCGGTGCTGCTGCTCGCGCTCGTGAAGACGCCGCAGCTGCGCAACGTGCTGTACGCGA
TCGCGCGGGACTTCGAGCGCATCGTGCCTGACGTGCTTGCCGACGAGCTCGAACGGATCGTCGCAGGCTCGCCGGAGGCG
CCGTCGCCCGCCGCGCGCGCGGCGGCGGGGGCGATCGGCGACGCGGGGGCGGCGCCGTCCGCCGCGCGCGAAGGCTCGGC
GCTCGCGCGCTACGCGATCGATCTGACCGCGCGTGCGCGCGCGGGCGAGATCGATCCGGTGGTCGGCCGCGACGGCGAGA
TTCGGCAGATCGTCGACATCCTGCTGCGCCGCCGGCAGAACAATCCGCTGCTCGTCGGCGAGGCGGGCGTCGGCAAGACC
GCGGTCGCCGAAGGCTTCGCGCTGCGCATCGTCGCGGGCGACGTGCCGCCGCCGCTGCGCGACGTCGAACTGTATCTGCT
CGACATCGGCCTGCTGCAGGCGGGCGCGAGCGTGAAGGGCGAATTCGAGAGCCGCCTGCGCGGCGTGATCGACGAGGCGA
GTTCGAGCGAGCGGCCCGTCATTCTGTTCATCGACGAGGTACACACGCTCGTCGGCGCGGGCGGCGCGGCGGGCACGGGC
GACGCGGCGAACCTGTTGAAGCCCGCGCTCGCGCGCGGCCTGCTGCGCACGATCGGCGCGACGACGTGGTCCGAATACAA
GCAATACATCGAGAAGGACCCGGCGCTCACGCGGCGCTTCCAGCTCGTGCAGGTGCGCGAGCCGGAGGAGGGCGCGGCGC
TGGCGATGCTGCGCGGGCTCGCCGCGAAGCTGGAGGCGCACCATCGCGTGCTCGTGCTCGACGATGCGCTGCAGGCGGCC
GTCACGCTGTCGCATCGCTACATTCCCGCGCGGCAGTTGCCGGACAAGGCGATCAGCCTGCTCGACACCGCGTGCGCGCG
CGTCGCGGTCAGCCAGCACGCGGTGCCCGCGCCGATCGAGGACGTGCGGCGGCGGATCGATAGCCTGCGCGTCGAGCGCG
AGCTGATCGCGCGCGAGTGCGCGCTCGGCGCGGGCGATGCGCAACGGCTCGATGCAATCGATGCATCGATCGCCGGCGAA
CAGACCACGCTCGATGCGCTCGACGCGCGCTGGCAGGCGGAGCGCGACGCGCTCGGCAAGATCGTCGACTGGCGGGCCTC
GCTGCTGGCCGACGATTCTTCGCGCGTGCTCGATGAGGCGGCGCGCGCGGACGTGCAGGCGAAGCTCTCGGCCGCGCTGC
GCGCGCTCGCCGAATTGCAGGGCGAGACGCCGCTCGTGCTGCCCGCGGTCGATACGCACGCGGTGGCCGCCGTGGTGTCC
GACTGGACCGGCATCCCGCTCGGGCGGATGGTGCGCGACGAGATGCAATCGGTGCTGAAGCTCGCCGAGACGCTCGCCGA
GCGCGTGGTCGGCCAGCCGCACGCGGTCGAGCTGATCGCCGAGCGCATTCAGACCGCGCGCGCGCGGCTCGACGATCCGG
CCAAGTCGCACGGCGTGTTCCTGCTGTGCGGGCCGTCCGGCGTCGGCAAGACCGAGACGGCGCTCGCGCTCGCCGAGATG
CTGTACGGCGGCGAGCACAACGCGATCACGATCAACATGAGCGAGTTTCAGGAGGCGCACACCGTATCGACGCTCAAGGG
CGCGCCGCCCGGCTACGTCGGCTACGGACAGGGCGGGGTGCTGACCGAGGCGGTGCGGCGGCGGCCGTACAGTGTCGTGC
TGCTCGACGAAATCGAGAAGGCGCACCGCGACGTGCACGAGATCTTCTTTCAGGTGTTCGACAAGGGCTGGATGGAAGAC
GGCGAGGGGCGCTATATCGACTTTCGCAACACGGTGATCCTCCTCACGTCGAACGTCGGTTCCGAGCGCGTGATGCAGCT
GTGCCGCGATCCGCAGCGCCTGCCCGATGCGCAGACCTTGACCGATGCGCTGCGCGAGGTGTTTCCCGCCGCGTTGTTGG
GACGCCTGACGGTCGTTCCGTACTACCCGCTCACCGACGAGATGCTCGCGCGGATCGTCGCATTGCAGCTCGCGCGCATC
GAGCGGCGCATCGAAGCGCACCACGGCATCGCGTTGCGCTGCGCGGATTCGGCGACCGCGCTGATCGCCGAGCGCTGCCG
GACGATCGAATCCGGCGGCCGCATGGTCGACGCGATTCTCACGCACACGGTGCTGCCGCGCATCAGCCAGGAGATCCTGC
GCGCGACGATCGAGGGGCGCGCGCTGCGGGCGATCGACGTGAGCGCCGAAGACGGCCAGTTCGTTTACCGATTCGAAGAG
GAGGGCGCGACGTGA