Detailed information of component protein


Summary

Component ID T6CP000584
Component protein type TssK
T6SS ID (Type) T6SS00068 insolico (Type i3)
Strain Burkholderia mallei ATCC 23344
Replicon chromosome II
Sequence Protein sequence (468 a.a.); Nucleotide sequence (1404 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) BMA_RS17980
Coordinate (Strand) 384323..385726 (+)
NCBI ID WP_004190585.1
RefSeq NC_006349
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 9.6e-161 30..465
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-467 MNEPVLSATPAAALRQRVIWTEGMFLRPQHFQQLERHWERYVGMRCLPLQGFYWGYDELQIDRELLALGKVALLAATGVMRDGTPFDLSHPDDRPEPLDVPADAKDQLVVLALPLWRGGAQEVSFGAGGNGEGHGGDGNAHAGFARYVVREYEVADANEVALGPALLQTGRLNVRLMLESELTGDWQALGVARVVERRTDGRLLVDDGYIPPRLVAQRDPVLLRHTRELHGLLTQRSEALGERLSEPGRGGVSEVADFLLLQLVNRYLALTWHAQQDVAAHPETLFCDWLKLACDLSTFTAAGRRPQSLAVYRHDDLRASFGELMAELRRSLSTVLEQNAIQIELRDVGNGMKVATIADPALRDTAGFVLAVRADVPADSLRARFPAQAKLGPVERIRDLVQLQLPGIAMRQLPVAPRQIPYHAGHTYFEIDKGGEMWKQLERSGGLAFHFAGEFPGLSMEFWAIRG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9951 - -


  Protein sequence: 468 a.a.    

>T6CP000584 NC_006349:384323-385726 [Burkholderia mallei ATCC 23344] [TssK]
MNEPVLSATPAAALRQRVIWTEGMFLRPQHFQQLERHWERYVGMRCLPLQGFYWGYDELQIDRELLALGKVALLAATGVM
RDGTPFDLSHPDDRPEPLDVPADAKDQLVVLALPLWRGGAQEVSFGAGGNGEGHGGDGNAHAGFARYVVREYEVADANEV
ALGPALLQTGRLNVRLMLESELTGDWQALGVARVVERRTDGRLLVDDGYIPPRLVAQRDPVLLRHTRELHGLLTQRSEAL
GERLSEPGRGGVSEVADFLLLQLVNRYLALTWHAQQDVAAHPETLFCDWLKLACDLSTFTAAGRRPQSLAVYRHDDLRAS
FGELMAELRRSLSTVLEQNAIQIELRDVGNGMKVATIADPALRDTAGFVLAVRADVPADSLRARFPAQAKLGPVERIRDL
VQLQLPGIAMRQLPVAPRQIPYHAGHTYFEIDKGGEMWKQLERSGGLAFHFAGEFPGLSMEFWAIRG*

  Nucleotide sequence: 1404 bp    

>T6CP000584 NC_006349:384323-385726 [Burkholderia mallei ATCC 23344] [TssK]
ATGAACGAGCCGGTATTGTCCGCGACCCCCGCTGCGGCGTTGCGCCAGCGCGTGATCTGGACCGAGGGCATGTTCCTGCG
GCCGCAGCATTTCCAGCAGCTCGAGCGGCACTGGGAGCGCTACGTCGGCATGCGCTGCCTGCCGCTGCAAGGCTTCTACT
GGGGCTACGACGAGTTGCAGATCGATCGCGAGCTGCTCGCGCTCGGCAAGGTCGCGCTGCTCGCCGCGACCGGCGTGATG
CGCGACGGCACGCCGTTCGACCTGTCGCATCCGGACGACCGGCCCGAGCCGCTCGACGTGCCCGCCGACGCGAAGGATCA
GCTCGTCGTGCTCGCGCTGCCGCTGTGGCGCGGCGGCGCGCAGGAGGTGTCGTTCGGCGCGGGCGGCAACGGCGAAGGCC
ACGGCGGCGACGGCAACGCGCACGCGGGCTTCGCGCGCTACGTCGTGCGCGAATACGAAGTCGCCGACGCGAACGAGGTC
GCGCTCGGCCCCGCGCTATTGCAGACCGGCCGCCTGAACGTGCGCCTGATGCTCGAATCCGAATTGACGGGCGACTGGCA
GGCGCTCGGCGTCGCGCGCGTCGTCGAGCGGCGCACCGATGGGCGGCTGCTCGTCGACGACGGCTACATTCCGCCGCGGC
TTGTCGCGCAGCGCGATCCGGTGCTGCTGCGCCACACGCGCGAGCTGCACGGGCTGCTCACGCAACGCAGCGAGGCGCTC
GGCGAGCGCCTGTCGGAGCCGGGGCGCGGCGGCGTGTCCGAAGTCGCCGATTTCCTGCTGCTGCAACTCGTCAACCGCTA
TCTGGCGCTCACGTGGCACGCGCAGCAGGATGTCGCCGCGCACCCGGAGACGCTGTTCTGCGATTGGCTGAAGCTCGCGT
GCGACCTGAGCACGTTCACCGCGGCCGGCCGCCGGCCGCAGTCGCTCGCGGTCTACCGGCACGACGATCTGCGCGCGAGC
TTCGGCGAGCTGATGGCCGAGCTGCGCCGCTCATTGTCGACGGTGCTCGAGCAGAACGCGATCCAGATCGAGCTGCGCGA
CGTGGGCAACGGCATGAAGGTCGCGACGATCGCCGATCCGGCGCTGCGCGACACCGCGGGCTTCGTGCTCGCCGTGCGCG
CCGACGTGCCGGCCGACAGCCTGCGCGCGCGCTTTCCCGCGCAGGCGAAGCTCGGTCCCGTCGAGCGCATTCGCGATCTC
GTGCAGTTGCAACTGCCGGGCATCGCGATGCGGCAGTTGCCCGTCGCGCCGCGGCAGATTCCGTATCACGCGGGCCACAC
GTACTTCGAGATCGACAAGGGCGGCGAGATGTGGAAACAGCTCGAACGCTCGGGCGGCCTCGCATTTCATTTCGCCGGCG
AATTCCCGGGACTCTCGATGGAGTTCTGGGCGATTCGCGGGTGA