Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   WHQ25_RS03350 Genome accession   NZ_CP148254
Coordinates   638606..639043 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain Z1323CCJ0004     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 633606..644043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHQ25_RS03325 (WHQ25_03325) - 634219..635244 (+) 1026 WP_237920616.1 sensor histidine kinase KdpD -
  WHQ25_RS03330 (WHQ25_03330) - 635268..635918 (+) 651 WP_224281667.1 DUF4118 domain-containing protein -
  WHQ25_RS03335 (WHQ25_03335) uvrB 636020..637993 (-) 1974 WP_004316755.1 excinuclease ABC subunit UvrB -
  WHQ25_RS03340 (WHQ25_03340) - 638147..638377 (+) 231 WP_002852327.1 hypothetical protein -
  WHQ25_RS03345 (WHQ25_03345) - 638367..638609 (+) 243 WP_002854947.1 hypothetical protein -
  WHQ25_RS03350 (WHQ25_03350) Cj0683 638606..639043 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  WHQ25_RS03355 (WHQ25_03355) priA 639025..640878 (+) 1854 WP_002867637.1 primosomal protein N' -
  WHQ25_RS03360 (WHQ25_03360) cipA 640888..642283 (-) 1396 Protein_650 DUF2972 domain-containing protein -
  WHQ25_RS03365 (WHQ25_03365) ispG 642429..643502 (+) 1074 WP_002854766.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=953428 WHQ25_RS03350 WP_002852324.1 638606..639043(+) (Cj0683) [Campylobacter jejuni strain Z1323CCJ0004]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=953428 WHQ25_RS03350 WP_002852324.1 638606..639043(+) (Cj0683) [Campylobacter jejuni strain Z1323CCJ0004]
ATGAACAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTGTCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAATGCTAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AATGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1