Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   V5G16_RS02320 Genome accession   NZ_CP145062
Coordinates   448306..448971 (+) Length   221 a.a.
NCBI ID   WP_003692819.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_T_2024     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 443306..453971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G16_RS02295 (V5G16_02300) cysT 443483..444312 (-) 830 Protein_447 sulfate ABC transporter permease subunit CysT -
  V5G16_RS02300 (V5G16_02305) - 444498..444830 (+) 333 WP_003687908.1 hypothetical protein -
  V5G16_RS02305 (V5G16_02310) - 445160..445669 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  V5G16_RS02310 (V5G16_02315) - 445901..446482 (-) 582 WP_003698180.1 superoxide dismutase -
  V5G16_RS02315 (V5G16_02320) dnaB 446646..448049 (+) 1404 WP_047917841.1 replicative DNA helicase -
  V5G16_RS02320 (V5G16_02325) pilH 448306..448971 (+) 666 WP_003692819.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  V5G16_RS02325 (V5G16_02330) pilV 449003..449611 (+) 609 WP_071197478.1 type IV pilus modification protein PilV Machinery gene
  V5G16_RS02330 (V5G16_02335) pilJ 449608..450552 (+) 945 WP_071197479.1 PilW family protein Machinery gene
  V5G16_RS02335 (V5G16_02340) pilK 450531..451142 (+) 612 WP_071197480.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  V5G16_RS02340 (V5G16_02345) pilL 451144..451617 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  V5G16_RS02345 (V5G16_02350) - 451687..451995 (-) 309 WP_010359926.1 AzlD family protein -
  V5G16_RS02350 (V5G16_02355) - 451992..452702 (-) 711 Protein_458 AzlC family ABC transporter permease -
  V5G16_RS02355 (V5G16_02360) dut 452868..453320 (+) 453 WP_003687923.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24573.13 Da        Isoelectric Point: 9.3895

>NTDB_id=936698 V5G16_RS02320 WP_003692819.1 448306..448971(+) (pilH) [Neisseria gonorrhoeae strain WHO_T_2024]
MCTRKQQGFTLTELLIVMAIAAIMATIALPNMSGWIASRRIASHAEQVANLLRFSRGEAVRLNLPVYICPTQVKKDGTGN
NRCDLGKKEQGMLAFGDKNGNKVYDGDAADVFLRSVVLNDDIKDKRIDYTFNHIAFGQTRPTADRVVWTFNQNGTFGYLS
DQNLKNDSKFVYSDGYIQIVLTDAKAVSVDEKKFRSAVVLINSSGRVEVCPKNDTRAVCKH

Nucleotide


Download         Length: 666 bp        

>NTDB_id=936698 V5G16_RS02320 WP_003692819.1 448306..448971(+) (pilH) [Neisseria gonorrhoeae strain WHO_T_2024]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGGTTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTACCCAAGTTAAAAAAGACGGTACGGGCAAC
AACCGATGCGACCTCGGTAAGAAGGAACAGGGGATGTTGGCTTTCGGCGACAAAAACGGCAATAAGGTATATGACGGCGA
TGCTGCGGATGTTTTTCTCCGCAGCGTGGTATTGAATGATGATATCAAGGATAAGCGGATTGATTACACTTTCAATCATA
TCGCTTTCGGTCAAACACGGCCGACTGCCGATCGTGTTGTTTGGACTTTTAACCAAAACGGGACATTCGGCTATTTGTCC
GATCAGAATCTCAAGAATGATTCCAAATTTGTTTATTCTGACGGTTATATCCAAATCGTGTTGACAGATGCGAAGGCGGT
TTCTGTCGATGAAAAAAAATTCCGTTCGGCGGTGGTTTTGATTAACAGCAGCGGCAGGGTTGAAGTTTGTCCTAAAAACG
ATACGCGCGCCGTATGCAAACATTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(44-205)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

87.33

100

0.873