Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   V3C14_RS11855 Genome accession   NZ_CP143947
Coordinates   2320882..2321940 (-) Length   352 a.a.
NCBI ID   WP_117690593.1    Uniprot ID   -
Organism   Agathobacter rectalis strain DFI.5.28     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2315882..2326940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3C14_RS11830 (V3C14_11885) - 2316926..2317462 (-) 537 WP_306784732.1 hypothetical protein -
  V3C14_RS11835 (V3C14_11890) - 2317466..2317612 (-) 147 WP_012743024.1 hypothetical protein -
  V3C14_RS11840 (V3C14_11895) - 2318136..2319164 (-) 1029 WP_306784733.1 hypothetical protein -
  V3C14_RS11845 (V3C14_11900) - 2319329..2319529 (-) 201 WP_012743028.1 hypothetical protein -
  V3C14_RS11850 (V3C14_11905) - 2319556..2320770 (-) 1215 WP_173848742.1 type II secretion system F family protein -
  V3C14_RS11855 (V3C14_11910) pilT 2320882..2321940 (-) 1059 WP_117690593.1 type IV pilus twitching motility protein PilT Machinery gene
  V3C14_RS11860 (V3C14_11915) - 2321954..2323657 (-) 1704 WP_117690594.1 GspE/PulE family protein -
  V3C14_RS11865 (V3C14_11920) - 2323757..2325154 (-) 1398 WP_306776795.1 sodium-dependent transporter -
  V3C14_RS20095 (V3C14_11925) metF 2325634..2326499 (-) 866 Protein_2299 methylenetetrahydrofolate reductase [NAD(P)H] -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38693.48 Da        Isoelectric Point: 6.5029

>NTDB_id=932145 V3C14_RS11855 WP_117690593.1 2320882..2321940(-) (pilT) [Agathobacter rectalis strain DFI.5.28]
MQIVDILKAAQQQNSSDIHIVPGNPVMLRIDGKLVPQGNQVLTNVETDNLLSPIVPQELKDVLKEKGELDFAFSVEGFSR
VRANVFRQRGSYAAALRILSYDVPTPQQLGIPQSVVNLTTKMRGLVLVTGATGSGKSTTLASLIDVIASRDSKNIITLED
PIEYLHSRRRSIVEQREIGKDTLSYAAALRAALRQDPDVILVGEMRDLETISTAITAAETGHLVFSTLHTNSSSDAIDRM
IDVFPPHQQQQIRVQLSGVLEGIVAQHLLPMVNGGRIAAFEVLLANNAIRNLIREAKAFQIPSIIQTSKREGMMMMDDCI
LQYYSQGLIAPETAVAYAHDPVSMASRVHLYY

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=932145 V3C14_RS11855 WP_117690593.1 2320882..2321940(-) (pilT) [Agathobacter rectalis strain DFI.5.28]
ATGCAGATAGTAGACATTTTAAAAGCAGCGCAGCAACAGAACTCATCGGATATACATATCGTACCGGGAAATCCGGTTAT
GCTTAGAATTGACGGAAAGCTTGTACCGCAGGGAAATCAGGTTCTTACCAATGTTGAGACGGACAACCTGCTTTCTCCAA
TTGTCCCGCAGGAGCTTAAAGATGTGCTAAAGGAGAAGGGAGAGCTTGATTTTGCTTTTTCGGTGGAGGGCTTTTCACGA
GTCAGAGCCAATGTGTTCAGACAGAGAGGTTCATATGCAGCAGCACTTCGTATTCTCTCATATGATGTGCCTACACCGCA
GCAGCTTGGCATACCACAGTCGGTTGTCAATCTTACCACAAAGATGAGAGGACTTGTCCTCGTGACAGGAGCTACAGGAA
GTGGTAAGTCGACCACATTGGCAAGTCTTATAGATGTCATTGCATCAAGAGATTCCAAAAATATAATCACGCTTGAAGAT
CCTATCGAGTACCTGCACTCAAGGCGCCGCTCTATAGTGGAACAGCGAGAGATTGGAAAGGATACACTCTCATATGCTGC
AGCCCTGAGAGCTGCACTGCGACAGGATCCGGATGTAATACTTGTAGGAGAGATGCGAGATCTTGAAACTATATCTACAG
CTATTACAGCGGCGGAGACAGGACATCTTGTATTTTCTACACTGCATACTAACAGTTCATCAGATGCAATTGACCGTATG
ATTGACGTTTTTCCACCACACCAGCAGCAACAGATACGAGTGCAGCTCTCAGGAGTTTTAGAGGGAATTGTTGCACAGCA
TCTGCTTCCAATGGTAAATGGCGGACGAATTGCAGCATTTGAGGTGCTCCTTGCAAACAATGCCATCAGAAACTTAATTC
GTGAGGCAAAAGCATTTCAGATTCCATCTATCATACAGACATCAAAGAGAGAGGGTATGATGATGATGGATGACTGTATT
TTACAGTATTACAGCCAGGGCCTTATAGCGCCGGAGACTGCAGTTGCATATGCACATGATCCGGTAAGCATGGCTAGCCG
TGTACACCTTTACTATTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.844

98.295

0.48
  pilT Acinetobacter baylyi ADP1

44.767

97.727

0.437
  pilT Legionella pneumophila strain ERS1305867

45.509

94.886

0.432
  pilT Legionella pneumophila strain Lp02

45.509

94.886

0.432
  pilT Acinetobacter nosocomialis M2

43.605

97.727

0.426
  pilT Vibrio cholerae strain A1552

45.593

93.466

0.426
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

45.593

93.466

0.426
  pilT Pseudomonas stutzeri DSM 10701

43.988

96.875

0.426
  pilT Acinetobacter baumannii D1279779

43.314

97.727

0.423
  pilT Acinetobacter baumannii strain A118

43.314

97.727

0.423
  pilT Pseudomonas aeruginosa PAK

43.695

96.875

0.423
  pilT Neisseria meningitidis 8013

42.775

98.295

0.42
  pilT Neisseria gonorrhoeae MS11

42.486

98.295

0.418
  pilU Vibrio cholerae strain A1552

38.348

96.307

0.369
  pilU Pseudomonas stutzeri DSM 10701

37.463

96.307

0.361