Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   SOP92_RS17925 Genome accession   NZ_CP139335
Coordinates   3726426..3727451 (-) Length   341 a.a.
NCBI ID   WP_324279753.1    Uniprot ID   -
Organism   Enterobacter ludwigii strain ES13E     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3721426..3732451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOP92_RS17895 (SOP92_17885) - 3722327..3722824 (+) 498 WP_032670169.1 SprT family zinc-dependent metalloprotease -
  SOP92_RS17900 (SOP92_17890) endA 3722919..3723626 (+) 708 WP_020883698.1 deoxyribonuclease I -
  SOP92_RS17905 (SOP92_17895) rsmE 3723679..3724410 (+) 732 WP_020883697.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  SOP92_RS17910 (SOP92_17900) gshB 3724450..3725397 (+) 948 WP_020883696.1 glutathione synthase -
  SOP92_RS17915 (SOP92_17905) - 3725484..3726044 (+) 561 WP_020883695.1 YqgE/AlgH family protein -
  SOP92_RS17920 (SOP92_17910) ruvX 3726044..3726460 (+) 417 WP_014171567.1 Holliday junction resolvase RuvX -
  SOP92_RS17925 (SOP92_17915) pilT 3726426..3727451 (-) 1026 WP_324279753.1 type IV pilus twitching motility protein PilT Machinery gene
  SOP92_RS17930 (SOP92_17920) - 3727469..3728170 (+) 702 WP_044865459.1 YggS family pyridoxal phosphate-dependent enzyme -
  SOP92_RS17935 (SOP92_17925) - 3728192..3728758 (+) 567 WP_014171570.1 YggT family protein -
  SOP92_RS17940 (SOP92_17930) yggU 3728755..3729051 (+) 297 WP_014885193.1 DUF167 family protein YggU -
  SOP92_RS17945 (SOP92_17935) - 3729055..3729648 (+) 594 WP_014171572.1 XTP/dITP diphosphatase -
  SOP92_RS17950 (SOP92_17940) hemW 3729641..3730783 (+) 1143 WP_014171573.1 radical SAM family heme chaperone HemW -
  SOP92_RS17955 (SOP92_17945) - 3730847..3731209 (+) 363 WP_138614617.1 DUF559 domain-containing protein -
  SOP92_RS17960 (SOP92_17950) - 3731271..3731987 (-) 717 WP_040018846.1 DUF2884 domain-containing protein -
  SOP92_RS17965 (SOP92_17955) - 3732044..3732370 (-) 327 WP_032678951.1 YggL family protein -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37093.10 Da        Isoelectric Point: 6.0946

>NTDB_id=908909 SOP92_RS17925 WP_324279753.1 3726426..3727451(-) (pilT) [Enterobacter ludwigii strain ES13E]
MDVEEIVALSVKHNVSDLHLCSDSPPRWRRSGRLEPAPFPPPEVDTLLKAWLNDEQQGTWWANGQVDFAVTLAGNQRLRG
SAFKQTSGVSMTLRLLPGVCPQLSALGVPRVVPELLSSDNGLILVTGATGSGKSTTLAAMVDFLNHHTDGHILTLEDPVE
FLYQSERCLIQQREIGQHSASFADALRGALRQDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAIERLVDT
FPAQEKDPVRNQLAGSLRAVLAQKLLPDAQGGRVALYELLVNTPAAANLIREGKTWQLPGIIQTGQQAGMQNFDQSLAER
RAQGQLQAPALNNPVRNSFRE

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=908909 SOP92_RS17925 WP_324279753.1 3726426..3727451(-) (pilT) [Enterobacter ludwigii strain ES13E]
ATGGATGTGGAAGAAATTGTGGCCCTTAGTGTAAAGCATAATGTCTCCGATCTACACCTGTGCAGTGATTCGCCACCGCG
CTGGCGCAGATCAGGTCGTCTTGAACCCGCGCCGTTTCCGCCTCCCGAAGTCGATACGCTATTAAAAGCGTGGCTTAACG
ACGAACAGCAGGGAACGTGGTGGGCGAACGGGCAGGTGGATTTTGCCGTCACCCTGGCGGGCAATCAGCGCCTGCGCGGA
AGCGCGTTTAAACAGACAAGCGGCGTCTCTATGACGCTGCGGCTGTTGCCCGGGGTCTGCCCGCAACTCTCCGCGTTGGG
GGTGCCCCGGGTTGTTCCTGAGCTGTTATCCAGTGACAACGGGTTGATCCTGGTCACCGGGGCAACCGGCAGCGGTAAGT
CCACTACGCTGGCAGCGATGGTAGATTTTCTTAATCACCATACTGACGGGCATATTCTGACGCTCGAAGACCCGGTGGAG
TTTCTGTACCAGAGCGAACGTTGCCTGATCCAGCAGCGCGAGATTGGCCAACACAGCGCGTCATTTGCCGACGCGCTGCG
CGGGGCGTTACGCCAGGATCCTGATGTCATACTGCTGGGTGAGCTGCGCGACAGTGAAACAATCCGCCTCGCGCTGACGG
CGGCAGAAACCGGACATCTGGTGCTCGCGACACTGCATACTCGCGGGGCAGCGCAGGCGATTGAGCGGCTGGTTGATACG
TTTCCGGCGCAGGAGAAAGATCCGGTGCGTAATCAGCTGGCCGGCAGCCTGCGGGCGGTGCTGGCGCAAAAGCTCCTCCC
CGATGCGCAGGGCGGGCGCGTGGCGCTTTATGAGCTGCTGGTGAATACTCCGGCGGCGGCGAATCTCATTCGCGAAGGAA
AAACGTGGCAATTGCCCGGTATTATTCAAACCGGCCAGCAGGCGGGGATGCAGAACTTTGACCAGAGCCTGGCTGAAAGA
CGGGCGCAGGGGCAACTCCAGGCCCCGGCGCTCAATAACCCTGTTCGAAATAGCTTTCGAGAATGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(112-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae strain A1552

49.112

99.12

0.487
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

49.112

99.12

0.487
  pilT Neisseria meningitidis 8013

48.348

97.654

0.472
  pilT Neisseria gonorrhoeae MS11

46.784

100

0.469
  pilT Legionella pneumophila strain Lp02

49.068

94.428

0.463
  pilT Legionella pneumophila strain ERS1305867

49.068

94.428

0.463
  pilT Acinetobacter baylyi ADP1

46.988

97.361

0.457
  pilT Pseudomonas stutzeri DSM 10701

47.706

95.894

0.457
  pilT Acinetobacter baumannii strain A118

47.401

95.894

0.455
  pilT Acinetobacter baumannii D1279779

47.401

95.894

0.455
  pilT Pseudomonas aeruginosa PAK

47.401

95.894

0.455
  pilT Acinetobacter nosocomialis M2

47.812

93.842

0.449
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.72

94.428

0.422
  pilU Pseudomonas stutzeri DSM 10701

40.303

96.774

0.39
  pilU Vibrio cholerae strain A1552

39.441

94.428

0.372