Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA/pilAI   Type   Machinery gene
Locus tag   SK095_RS19210 Genome accession   NZ_CP139195
Coordinates   4099984..4100382 (+) Length   132 a.a.
NCBI ID   WP_320547185.1    Uniprot ID   -
Organism   Pseudomonas sp. AN-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4094984..4105382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SK095_RS19190 (SK095_19190) coaE 4095132..4095740 (-) 609 WP_320547181.1 dephospho-CoA kinase -
  SK095_RS19195 (SK095_19195) pilD 4095938..4096807 (-) 870 WP_320547182.1 A24 family peptidase Machinery gene
  SK095_RS19200 (SK095_19200) pilC 4096811..4098052 (-) 1242 WP_320547183.1 type II secretion system F family protein Machinery gene
  SK095_RS19205 (SK095_19205) pilB 4098055..4099755 (-) 1701 WP_320547184.1 type IV-A pilus assembly ATPase PilB Machinery gene
  SK095_RS19210 (SK095_19210) pilA/pilAI 4099984..4100382 (+) 399 WP_320547185.1 pilin Machinery gene
  SK095_RS19215 (SK095_19215) - 4100477..4102300 (+) 1824 WP_320547186.1 hypothetical protein -
  SK095_RS19220 (SK095_19220) - 4102464..4104122 (+) 1659 WP_320547187.1 hypothetical protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 13710.53 Da        Isoelectric Point: 6.1783

>NTDB_id=907826 SK095_RS19210 WP_320547185.1 4099984..4100382(+) (pilA/pilAI) [Pseudomonas sp. AN-1]
MKAQMQKGFTLIELMIVVAIIGILAAVAIPAYSDYQARAKVSAGLAEISAGKTAFETRLNNGETVSGVSDIGLQASTGNC
TISTTGTTIQCALVNAPSQVNGATITWTRNSTTGEWSCASSADNKYDPKTCQ

Nucleotide


Download         Length: 399 bp        

>NTDB_id=907826 SK095_RS19210 WP_320547185.1 4099984..4100382(+) (pilA/pilAI) [Pseudomonas sp. AN-1]
ATGAAAGCACAAATGCAGAAGGGCTTTACCCTGATCGAACTGATGATCGTGGTTGCGATCATCGGCATTCTGGCTGCCGT
GGCCATTCCGGCCTACTCGGACTACCAGGCCCGCGCCAAGGTGAGCGCCGGCCTCGCTGAGATCTCCGCAGGCAAGACCG
CCTTTGAAACCCGCCTGAACAACGGCGAGACCGTTTCCGGGGTTTCCGATATCGGCCTGCAGGCGAGCACCGGCAACTGC
ACCATCTCGACTACTGGCACCACCATCCAGTGCGCCCTGGTCAATGCTCCGAGCCAGGTCAATGGCGCGACCATCACCTG
GACCCGTAACTCCACCACCGGCGAGTGGAGCTGCGCATCCTCGGCTGACAACAAGTACGATCCCAAGACCTGCCAGTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(37-132)

Prokaryotic N-terminal methylation motif (N_methyl)

(6-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA/pilAI Pseudomonas stutzeri DSM 10701

51.799

100

0.545
  pilA/pilAII Pseudomonas stutzeri DSM 10701

48.12

100

0.485
  comP Acinetobacter baylyi ADP1

43.151

100

0.477
  pilA Acinetobacter baumannii strain A118

44.444

100

0.455
  pilA Pseudomonas aeruginosa PAK

39.333

100

0.447
  pilA2 Legionella pneumophila str. Paris

39.568

100

0.417
  pilA/pilA1 Eikenella corrodens VA1

33.987

100

0.394
  pilA Vibrio cholerae C6706

34.483

100

0.379
  pilA Vibrio cholerae strain A1552

34.483

100

0.379
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

34.483

100

0.379
  pilA Vibrio parahaemolyticus RIMD 2210633

38.583

96.212

0.371
  pilA Ralstonia pseudosolanacearum GMI1000

41.739

87.121

0.364