Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   SK095_RS19200 Genome accession   NZ_CP139195
Coordinates   4096811..4098052 (-) Length   413 a.a.
NCBI ID   WP_320547183.1    Uniprot ID   -
Organism   Pseudomonas sp. AN-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4091811..4103052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SK095_RS19160 (SK095_19160) - 4092109..4092471 (-) 363 WP_320547177.1 DsrE family protein -
  SK095_RS19165 (SK095_19165) - 4092475..4093041 (-) 567 WP_320547178.1 DUF4136 domain-containing protein -
  SK095_RS19170 (SK095_19170) - 4093116..4093703 (-) 588 WP_201485141.1 DUF4136 domain-containing protein -
  SK095_RS19175 (SK095_19175) - 4093857..4094624 (-) 768 WP_320547179.1 methyltransferase domain-containing protein -
  SK095_RS19180 (SK095_19180) - 4094621..4094926 (-) 306 WP_320548930.1 MazG-like family protein -
  SK095_RS19185 (SK095_19185) yacG 4094932..4095132 (-) 201 WP_320547180.1 DNA gyrase inhibitor YacG -
  SK095_RS19190 (SK095_19190) coaE 4095132..4095740 (-) 609 WP_320547181.1 dephospho-CoA kinase -
  SK095_RS19195 (SK095_19195) pilD 4095938..4096807 (-) 870 WP_320547182.1 A24 family peptidase Machinery gene
  SK095_RS19200 (SK095_19200) pilC 4096811..4098052 (-) 1242 WP_320547183.1 type II secretion system F family protein Machinery gene
  SK095_RS19205 (SK095_19205) pilB 4098055..4099755 (-) 1701 WP_320547184.1 type IV-A pilus assembly ATPase PilB Machinery gene
  SK095_RS19210 (SK095_19210) pilA/pilAI 4099984..4100382 (+) 399 WP_320547185.1 pilin Machinery gene
  SK095_RS19215 (SK095_19215) - 4100477..4102300 (+) 1824 WP_320547186.1 hypothetical protein -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44758.73 Da        Isoelectric Point: 10.0218

>NTDB_id=907824 SK095_RS19200 WP_320547183.1 4096811..4098052(-) (pilC) [Pseudomonas sp. AN-1]
MAAKLAAKAAAKAPQNSPYIWEGVDRRGTKIKGEINASNSAMVKAQLRKQGINPIKVRKKAGSLLGKGKAIKPIDIALFS
RQLATMMKSGVPLLQSFDIIADGVENQNMRALVLEIKQEVAAGNSLASALRKKPRYFDDLYCNLVESGEQSGALETLLDR
IATYKEKTEALKAKVKKAMTYPIAVIVVAVIVSAILLIKVVPQFQSVFEGFGAELPAFTMMVINISEVLQQWWLIALAGI
VAAVFIFKQIHRSSEKFRNQVDRTMLKIPLVGDISYKSAVARYARTLSTTFAAGVPLVEALDSVAGAAGNVVFRNAVNKI
KQDVSSGIQLNFAMRTAAIFPAMAIQMTSIGEESGSLDSMLDKVAEYYEAEVDNMVDNLTTLMEPLIMAVLGVLVGGLII
AMYLPIFQLGQVV

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=907824 SK095_RS19200 WP_320547183.1 4096811..4098052(-) (pilC) [Pseudomonas sp. AN-1]
ATGGCGGCAAAACTGGCGGCAAAAGCGGCGGCAAAAGCGCCACAGAACAGCCCTTACATCTGGGAGGGGGTCGATCGTCG
CGGCACCAAGATCAAGGGCGAGATCAATGCATCGAACTCGGCCATGGTCAAGGCGCAACTGCGCAAGCAGGGCATCAATC
CAATCAAGGTACGCAAGAAGGCTGGCTCTCTGCTCGGCAAGGGTAAAGCGATCAAACCTATCGATATCGCCCTGTTTTCT
CGTCAGTTGGCTACCATGATGAAGTCCGGCGTGCCACTGCTGCAGTCGTTCGACATCATCGCCGACGGGGTGGAAAACCA
GAACATGCGCGCCCTTGTTCTGGAGATCAAGCAGGAGGTCGCTGCCGGCAATAGCCTGGCCTCGGCGCTGCGCAAGAAGC
CGCGCTACTTCGACGACCTCTACTGCAACCTGGTGGAGTCAGGCGAGCAGTCCGGCGCCCTGGAAACCCTGCTGGACCGC
ATCGCCACCTACAAGGAAAAAACTGAGGCGCTCAAGGCCAAGGTCAAGAAGGCCATGACCTATCCGATTGCAGTGATCGT
GGTTGCGGTGATCGTTTCTGCGATCCTCCTTATCAAGGTGGTGCCTCAGTTTCAGAGTGTCTTCGAAGGCTTTGGTGCCG
AGCTGCCCGCCTTCACCATGATGGTGATCAATATTTCCGAAGTCCTGCAGCAATGGTGGCTCATTGCCCTGGCGGGAATT
GTCGCAGCAGTTTTCATCTTCAAGCAGATACATCGGAGCTCGGAAAAATTCCGCAATCAGGTGGACCGCACCATGCTGAA
AATTCCGCTGGTGGGTGATATCAGTTACAAGAGTGCGGTGGCCCGCTATGCACGTACACTGTCCACCACCTTCGCAGCTG
GTGTGCCCTTGGTCGAGGCGCTGGACTCGGTTGCCGGCGCAGCCGGCAACGTGGTATTCCGCAATGCGGTCAACAAGATC
AAGCAGGACGTTTCCAGCGGTATCCAGCTGAATTTCGCCATGCGCACCGCCGCCATCTTCCCCGCCATGGCCATCCAAAT
GACCTCCATCGGCGAGGAGTCCGGCTCGCTGGACAGCATGCTGGACAAGGTTGCCGAATACTACGAGGCCGAGGTGGACA
ACATGGTCGACAACCTCACCACCCTGATGGAGCCGCTGATCATGGCCGTGCTCGGCGTGCTGGTCGGCGGCCTGATCATT
GCCATGTACCTGCCGATCTTCCAGCTGGGCCAAGTCGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(284-405)

Type II secretion system (T2SS), protein F (T2SSF)

(79-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

75.743

97.821

0.741
  pilC Acinetobacter baumannii D1279779

59.314

98.789

0.586
  pilC Acinetobacter baylyi ADP1

59.214

98.547

0.584
  pilC Legionella pneumophila strain ERS1305867

52.723

97.821

0.516
  pilC Vibrio cholerae strain A1552

43.596

98.305

0.429
  pilG Neisseria gonorrhoeae MS11

43.532

97.337

0.424
  pilG Neisseria meningitidis 44/76-A

43.532

97.337

0.424
  pilC Vibrio campbellii strain DS40M4

40.796

97.337

0.397
  pilC Thermus thermophilus HB27

37.75

96.852

0.366