Detailed information NTG0907823

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: SK095_RS19195
• Genome accession: NZ_CP139195
• Coordinates: 4095938..4096807 (-)
• Length: 289 a.a.
• NCBI ID: WP_320547182.1
• Uniprot ID: -
• Organism: Pseudomonas sp. AN-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4090938..4101807

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SK095_RS19155 (SK095_19155)	-	4091604..4092083 (-)	480	WP_320547176.1	glycine cleavage system protein H	-
SK095_RS19160 (SK095_19160)	-	4092109..4092471 (-)	363	WP_320547177.1	DsrE family protein	-
SK095_RS19165 (SK095_19165)	-	4092475..4093041 (-)	567	WP_320547178.1	DUF4136 domain-containing protein	-
SK095_RS19170 (SK095_19170)	-	4093116..4093703 (-)	588	WP_201485141.1	DUF4136 domain-containing protein	-
SK095_RS19175 (SK095_19175)	-	4093857..4094624 (-)	768	WP_320547179.1	methyltransferase domain-containing protein	-
SK095_RS19180 (SK095_19180)	-	4094621..4094926 (-)	306	WP_320548930.1	MazG-like family protein	-
SK095_RS19185 (SK095_19185)	yacG	4094932..4095132 (-)	201	WP_320547180.1	DNA gyrase inhibitor YacG	-
SK095_RS19190 (SK095_19190)	coaE	4095132..4095740 (-)	609	WP_320547181.1	dephospho-CoA kinase	-
SK095_RS19195 (SK095_19195)	pilD	4095938..4096807 (-)	870	WP_320547182.1	A24 family peptidase	Machinery gene
SK095_RS19200 (SK095_19200)	pilC	4096811..4098052 (-)	1242	WP_320547183.1	type II secretion system F family protein	Machinery gene
SK095_RS19205 (SK095_19205)	pilB	4098055..4099755 (-)	1701	WP_320547184.1	type IV-A pilus assembly ATPase PilB	Machinery gene
SK095_RS19210 (SK095_19210)	pilA/pilAI	4099984..4100382 (+)	399	WP_320547185.1	pilin	Machinery gene

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31640.45 Da
• Isoelectric Point: 6.9302

>NTDB_id=907823 SK095_RS19195 WP_320547182.1 4095938..4096807(-) (pilD) [Pseudomonas sp. AN-1]
MNIVDFLASNPLAFVFCATVIGLLIGSFLNVVVYRLPIMMQRDWQAQAREVLELPGVEHERFDLLLPDSSCPHCGHRIRP
WENIPLLSWLALRGRCSGCQAPISKRYPLVELACGMLSGYVAWHFGFGWQAGAALLLSWGLLAMSLIDADHQLLPDVLVL
PLLWLGLIVNQSGLFASPADAFWGAVAGYLSLWSVYWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVGA
VLGIVILRLRRAGSGTPLPFGPYLAIAGWIALLWGDEITGSYLRFAGMG

Nucleotide

• Length: 870 bp

>NTDB_id=907823 SK095_RS19195 WP_320547182.1 4095938..4096807(-) (pilD) [Pseudomonas sp. AN-1]
ATGAATATCGTCGACTTCCTGGCCAGCAACCCGCTGGCCTTCGTTTTCTGCGCTACCGTCATCGGCCTGCTGATCGGCAG
TTTCCTCAACGTGGTGGTCTACCGCCTGCCGATCATGATGCAGCGCGACTGGCAGGCGCAGGCGCGCGAGGTGCTGGAGC
TGCCGGGCGTCGAGCACGAGCGCTTCGATCTGCTGCTGCCGGACTCCAGTTGCCCGCACTGCGGGCACCGGATCAGGCCT
TGGGAGAACATCCCGCTGCTCAGCTGGCTGGCCCTGCGCGGGCGCTGCTCGGGCTGCCAGGCGCCGATCAGCAAGCGCTA
TCCGCTGGTGGAGCTGGCCTGCGGCATGCTGTCGGGCTATGTCGCCTGGCACTTCGGCTTCGGCTGGCAGGCAGGTGCCG
CGCTGCTGCTGAGCTGGGGCCTGCTGGCGATGAGTCTGATCGATGCCGATCATCAGCTGCTGCCCGACGTGCTGGTGCTG
CCGCTGCTGTGGCTGGGGCTGATCGTCAACCAGTCCGGGCTGTTCGCTAGCCCGGCCGATGCCTTCTGGGGGGCGGTGGC
CGGCTATCTCAGCCTGTGGTCGGTGTACTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGTGACTTCA
AGCTGCTGGCCATGCTCGGCGCCTGGGGTGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCCTCGCTGGTCGGCGCC
GTGCTCGGCATCGTCATCCTGCGCCTGCGCCGCGCCGGGAGCGGTACGCCGCTGCCCTTCGGCCCCTACCTGGCCATCGC
CGGCTGGATCGCCCTGCTGTGGGGCGACGAGATCACCGGCAGCTACCTGCGCTTTGCAGGGATGGGTTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

• Type IV leader peptidase family (Peptidase_A24) (136-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	56.159	95.502	0.536
pilD	Acinetobacter baumannii D1279779	51.761	98.27	0.509
pilD	Acinetobacter nosocomialis M2	51.761	98.27	0.509
pilD	Vibrio campbellii strain DS40M4	53.261	95.502	0.509
pilD	Neisseria gonorrhoeae MS11	50.951	91.003	0.464