Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   RZV16_RS16175 Genome accession   NZ_CP136578
Coordinates   3796722..3797150 (-) Length   142 a.a.
NCBI ID   WP_355505406.1    Uniprot ID   -
Organism   Xanthomonas cannabis strain DAR82727     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3791722..3802150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RZV16_RS16160 (RZV16_16105) pilR 3792626..3794020 (+) 1395 WP_355505398.1 sigma-54 dependent transcriptional regulator Regulator
  RZV16_RS16165 (RZV16_16110) - 3794668..3794787 (-) 120 WP_355505401.1 pilus assembly protein -
  RZV16_RS16170 (RZV16_16115) pilB 3794852..3796600 (-) 1749 WP_355505404.1 type IV-A pilus assembly ATPase PilB Machinery gene
  RZV16_RS16175 (RZV16_16120) pilA 3796722..3797150 (-) 429 WP_355505406.1 pilin Machinery gene
  RZV16_RS16180 (RZV16_16125) pilC 3797489..3798751 (+) 1263 WP_355505409.1 type II secretion system F family protein Machinery gene
  RZV16_RS16185 (RZV16_16130) - 3798758..3799621 (+) 864 WP_046343941.1 A24 family peptidase -
  RZV16_RS16190 (RZV16_16135) coaE 3799635..3800258 (+) 624 WP_355505413.1 dephospho-CoA kinase -
  RZV16_RS16195 (RZV16_16140) - 3800330..3800508 (+) 179 Protein_3170 SymE family type I addiction module toxin -
  RZV16_RS16200 (RZV16_16145) - 3800613..3801944 (-) 1332 WP_166744818.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 14370.46 Da        Isoelectric Point: 9.1085

>NTDB_id=891671 RZV16_RS16175 WP_355505406.1 3796722..3797150(-) (pilA) [Xanthomonas cannabis strain DAR82727]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTVRGRVSEAMVAASAAKTVVAENAANGSALNSGWTAPTETSNVKSVA
VAAATGNITVTTADKAGGGTIIFAPTANGAALASGTVPTDRISWDCKGGTLAAKYRPAECRN

Nucleotide


Download         Length: 429 bp        

>NTDB_id=891671 RZV16_RS16175 WP_355505406.1 3796722..3797150(-) (pilA) [Xanthomonas cannabis strain DAR82727]
ATGAAGAAGCAACAAGGCTTTACCTTGATCGAACTAATGATTGTTGTCGCGATCATCGCGATTCTTGCAGCTATTGCGCT
GCCGGCTTATCAGGACTACACCGTTCGCGGCCGTGTTTCTGAGGCTATGGTTGCTGCATCTGCCGCGAAGACTGTAGTTG
CCGAGAACGCCGCCAACGGCTCGGCCCTGAATAGCGGTTGGACCGCTCCTACTGAAACCAGTAATGTTAAGAGCGTGGCT
GTTGCTGCCGCTACGGGCAACATCACTGTGACGACAGCCGACAAGGCAGGTGGCGGCACAATTATTTTTGCTCCCACTGC
TAACGGTGCTGCACTGGCCTCCGGCACTGTTCCCACCGATCGCATTTCTTGGGATTGCAAAGGCGGCACCTTGGCTGCAA
AGTACCGCCCGGCTGAATGCCGCAACTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(35-141)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Ralstonia pseudosolanacearum GMI1000

50.943

100

0.57
  pilA2 Legionella pneumophila strain ERS1305867

53.425

100

0.549
  pilA2 Legionella pneumophila str. Paris

52.74

100

0.542
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

39.894

100

0.528
  comP Acinetobacter baylyi ADP1

46.259

100

0.479
  pilA/pilAI Pseudomonas stutzeri DSM 10701

41.216

100

0.43
  pilA/pilAII Pseudomonas stutzeri DSM 10701

40.411

100

0.415
  pilA Acinetobacter baumannii strain A118

39.007

99.296

0.387
  pilE Neisseria gonorrhoeae MS11

34.615

100

0.38
  pilA Vibrio cholerae C6706

34.416

100

0.373
  pilA Vibrio cholerae strain A1552

34.416

100

0.373
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

34.416

100

0.373