Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   RZV16_RS16160 Genome accession   NZ_CP136578
Coordinates   3792626..3794020 (+) Length   464 a.a.
NCBI ID   WP_355505398.1    Uniprot ID   -
Organism   Xanthomonas cannabis strain DAR82727     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3787626..3799020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RZV16_RS16145 (RZV16_16090) sucD 3788187..3789062 (-) 876 WP_005921370.1 succinate--CoA ligase subunit alpha -
  RZV16_RS16150 (RZV16_16095) sucC 3789087..3790256 (-) 1170 WP_039405518.1 ADP-forming succinate--CoA ligase subunit beta -
  RZV16_RS16155 (RZV16_16100) - 3790488..3792101 (+) 1614 WP_039405515.1 HAMP domain-containing sensor histidine kinase -
  RZV16_RS16160 (RZV16_16105) pilR 3792626..3794020 (+) 1395 WP_355505398.1 sigma-54 dependent transcriptional regulator Regulator
  RZV16_RS16165 (RZV16_16110) - 3794668..3794787 (-) 120 WP_355505401.1 pilus assembly protein -
  RZV16_RS16170 (RZV16_16115) pilB 3794852..3796600 (-) 1749 WP_355505404.1 type IV-A pilus assembly ATPase PilB Machinery gene
  RZV16_RS16175 (RZV16_16120) pilA 3796722..3797150 (-) 429 WP_355505406.1 pilin Machinery gene
  RZV16_RS16180 (RZV16_16125) pilC 3797489..3798751 (+) 1263 WP_355505409.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50157.55 Da        Isoelectric Point: 6.5721

>NTDB_id=891669 RZV16_RS16160 WP_355505398.1 3792626..3794020(+) (pilR) [Xanthomonas cannabis strain DAR82727]
MNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIARRHPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSTAMESLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTPSALDALDQYGFPGNVRELENILERALALAEDDQISASDLRLPAHGGHRLAAAPGSAA
VEPREAVHDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=891669 RZV16_RS16160 WP_355505398.1 3792626..3794020(+) (pilR) [Xanthomonas cannabis strain DAR82727]
ATGAACGAACCCAAAAGCGCCCTGGTTGTCGATGACGAGCGAGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGTAT
GGGCCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCGCGCGAGTTACTGGCCAACAACCCGTACGACCTGTGCCTGA
CCGACATGCGGTTGCCGGACGGCAACGGCATCGAACTGGTCACCGAAATCGCCAGGCGCCACCCGCAGACCCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCCGTGGAAGCGCTGAAGGCCGGCGCCTTCGACTTCGTGAGCAAGCCGGT
GGACATCGGCGTGTTGCGTGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCGGCCCCGCCACCGCCGC
CACCGGAACAGGCCAGCCGCTTGCTGGGCGATTCGACCGCGATGGAAAGCCTGCGCGCCACCATCGGCAAGGTGGCGCGC
AGCCAGGCGCCGGTCTATATCGTCGGCGAATCGGGCGTGGGCAAGGAGCTGGTGGCGCGCACCATCCACGAGCAGGGCGC
GCGCGCGGCCGGCCCCTTCGTGCCGGTCAACTGCGGCGCCATCCCGGCCGAATTGATGGAAAGCGAGTTCTTCGGCCACA
AGAAAGGCAGCTTCACCGGCGCACATGCCGACAAGCCGGGCCTGTTCCAGGCCGCACACGGCGGCACGCTGTTCCTAGAC
GAAGTGGCCGAGCTGCCGCTGCAGATGCAGGTCAAGCTGTTGCGCGCGATCCAGGAAAAGTCAGTGCGCCCGGTCGGCGC
CTCGGGCGAAACCCTGGTGGACGTCCGCATCCTGTCGGCCACCCACAAGGACCTAGGCGACCTGGTCTCCGACGGCCGCT
TCCGTCACGACCTGTACTACCGCATCAACGTGATCGAACTGCGCGTCCCACCACTGCGCGAACGCGGTGGCGACCTGCCG
CAACTGGCCGCCGCCATCATCGCCCGGCTGGCGCACAGCCATGGCCGCCCGATCCCGCTGCTGACGCCCTCGGCGCTCGA
CGCACTGGACCAGTACGGCTTCCCCGGCAACGTGCGCGAGCTGGAAAACATCCTTGAACGCGCCCTGGCCCTGGCCGAGG
ACGACCAGATCAGCGCCAGCGACCTGCGCCTGCCCGCCCACGGCGGCCACCGCCTCGCCGCCGCCCCCGGCAGCGCCGCG
GTCGAACCGCGCGAAGCCGTCCACGACATCGACCCGGCGTCCGCCGCACTGCCTTCCTACATCGAGCAACTGGAGCGCGC
CGCGATCCAGAAAGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACCGCCGCGCAGCTGGGTATCACGTTTCGGGCGT
TGCGTTACAAGTTGAAAAAGTTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Response regulator receiver domain (Response_reg)

(8-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

64.147

99.784

0.64
  pilR Acinetobacter baumannii strain A118

49.353

100

0.494