Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   RZV16_RS16180 Genome accession   NZ_CP136578
Coordinates   3797489..3798751 (+) Length   420 a.a.
NCBI ID   WP_355505409.1    Uniprot ID   -
Organism   Xanthomonas cannabis strain DAR82727     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3792489..3803751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RZV16_RS16160 (RZV16_16105) pilR 3792626..3794020 (+) 1395 WP_355505398.1 sigma-54 dependent transcriptional regulator Regulator
  RZV16_RS16165 (RZV16_16110) - 3794668..3794787 (-) 120 WP_355505401.1 pilus assembly protein -
  RZV16_RS16170 (RZV16_16115) pilB 3794852..3796600 (-) 1749 WP_355505404.1 type IV-A pilus assembly ATPase PilB Machinery gene
  RZV16_RS16175 (RZV16_16120) pilA 3796722..3797150 (-) 429 WP_355505406.1 pilin Machinery gene
  RZV16_RS16180 (RZV16_16125) pilC 3797489..3798751 (+) 1263 WP_355505409.1 type II secretion system F family protein Machinery gene
  RZV16_RS16185 (RZV16_16130) - 3798758..3799621 (+) 864 WP_046343941.1 A24 family peptidase -
  RZV16_RS16190 (RZV16_16135) coaE 3799635..3800258 (+) 624 WP_355505413.1 dephospho-CoA kinase -
  RZV16_RS16195 (RZV16_16140) - 3800330..3800508 (+) 179 Protein_3170 SymE family type I addiction module toxin -
  RZV16_RS16200 (RZV16_16145) - 3800613..3801944 (-) 1332 WP_166744818.1 HAMP domain-containing sensor histidine kinase -
  RZV16_RS16205 (RZV16_16150) - 3801937..3802614 (-) 678 WP_003490678.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 46149.63 Da        Isoelectric Point: 10.3509

>NTDB_id=891672 RZV16_RS16180 WP_355505409.1 3797489..3798751(+) (pilC) [Xanthomonas cannabis strain DAR82727]
MSVTRNAIKKQKVDRGASQQAQLFLWEGTDKRGIKMKGEQTARNMNMLRAELRRQGINPSVVKPKPKPLFGAAGKKITPK
DIAFFSRQMATMMKSGVPIVGSLEIIGEGHKNPRMRKMVGQVRTDIEGGSSLHESISKHPVQFDELYRNLVRAGEGAGVL
ETVLDTVATYKENIEALKGKIKKALFYPAMVIAVALIVSAILLIFVVPQFEEVFKGFGAELPAFTQMIVGASRFMVSYWW
IMLFVIAGTIVGFIFAYKRSPSMQHTMDRLILRVPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNRVYE
DAVLRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPMIMVFIGVV
VGGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=891672 RZV16_RS16180 WP_355505409.1 3797489..3798751(+) (pilC) [Xanthomonas cannabis strain DAR82727]
ATGTCTGTCACACGTAATGCCATTAAGAAGCAAAAGGTGGACCGCGGTGCCAGTCAACAGGCACAGCTGTTCCTCTGGGA
AGGAACCGATAAGCGCGGAATCAAGATGAAAGGCGAGCAGACTGCGCGCAACATGAACATGTTGCGTGCGGAACTTCGCC
GCCAAGGAATCAATCCGTCGGTAGTCAAGCCCAAGCCCAAGCCACTGTTCGGAGCCGCAGGCAAGAAAATTACGCCAAAA
GACATCGCATTTTTCAGCCGCCAGATGGCGACTATGATGAAATCGGGTGTACCGATTGTAGGTTCACTCGAGATCATCGG
TGAAGGCCACAAGAACCCACGCATGAGAAAGATGGTGGGCCAGGTGAGAACGGATATCGAGGGGGGCTCATCTCTCCATG
AATCAATCAGCAAACATCCAGTGCAGTTTGATGAGCTCTATCGAAACCTAGTGCGAGCAGGTGAAGGCGCAGGCGTTCTG
GAGACAGTGCTAGATACAGTTGCCACTTACAAAGAAAACATAGAAGCCCTGAAGGGAAAGATCAAAAAGGCCCTGTTTTA
TCCAGCAATGGTAATTGCAGTCGCGCTTATTGTCAGCGCTATCCTGCTTATTTTTGTTGTCCCTCAATTTGAAGAGGTCT
TTAAAGGTTTCGGCGCCGAGCTACCTGCCTTTACTCAAATGATTGTGGGAGCATCACGCTTTATGGTGAGCTATTGGTGG
ATCATGCTATTCGTAATAGCAGGCACCATCGTCGGATTCATCTTTGCTTATAAACGCTCACCCAGCATGCAACATACCAT
GGACAGGTTGATATTAAGAGTACCTGTCATAGGCCAAATCATGCATAACAGTTCGATTGCGCGCTTCGCGCGCACCACTG
CTGTTACCTTTAAGGCAGGCGTCCCACTGGTGGAGGCATTAGGCATTGTTGCTGGCGCCACCGGCAATCGCGTTTACGAA
GATGCTGTGCTCCGCATGCGTGATGATGTGTCTGTGGGATACCCTGTCAACATGGCGATGAAACAGGTAAACCTGTTTCC
ACACATGGTTATTCAAATGACTGCTATCGGCGAAGAAGCTGGTGCGCTAGATGCCATGCTCTTCAAGGTAGCGGAATACT
TCGAGCAGGAGGTCAACAATGCTGTGGATGCGCTCAGCAGTCTGCTCGAACCGATGATTATGGTCTTTATCGGCGTTGTC
GTTGGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(289-411)

Type II secretion system (T2SS), protein F (T2SSF)

(85-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.912

94.524

0.519
  pilC Legionella pneumophila strain ERS1305867

53.283

94.286

0.502
  pilC Acinetobacter baylyi ADP1

51.861

95.952

0.498
  pilC Acinetobacter baumannii D1279779

50.369

96.905

0.488
  pilG Neisseria gonorrhoeae MS11

43.98

96.905

0.426
  pilG Neisseria meningitidis 44/76-A

43.489

96.905

0.421
  pilC Vibrio campbellii strain DS40M4

40.695

95.952

0.39
  pilC Vibrio cholerae strain A1552

40.806

94.524

0.386