Detailed information NTG0880370

Bioinformatically predicted

Overview

• Name: comYC
• Type: Machinery gene
• Locus tag: RJW51_RS05725
• Genome accession: NZ_CP134491
• Coordinates: 1140581..1140865 (-)
• Length: 94 a.a.
• NCBI ID: WP_172089530.1
• Uniprot ID: -
• Organism: Streptococcus parasuis strain 1628469
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1135581..1145865

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RJW51_RS05690 (RJW51_05675)	-	1135996..1136547 (-)	552	WP_024404088.1	folate family ECF transporter S component	-
RJW51_RS05695 (RJW51_05680)	-	1136819..1138006 (-)	1188	WP_172040736.1	acetate/propionate family kinase	-
RJW51_RS05700 (RJW51_05685)	comYH	1138056..1139009 (-)	954	WP_172071572.1	class I SAM-dependent methyltransferase	Machinery gene
RJW51_RS05705 (RJW51_05690)	comGG	1139029..1139529 (-)	501	WP_172089532.1	competence type IV pilus minor pilin ComGG	-
RJW51_RS05710 (RJW51_05695)	comYF	1139507..1139941 (-)	435	WP_172089531.1	competence type IV pilus minor pilin ComGF	Machinery gene
RJW51_RS05715 (RJW51_05700)	comGE	1139928..1140221 (-)	294	WP_105126461.1	competence type IV pilus minor pilin ComGE	-
RJW51_RS05720 (RJW51_05705)	comGD	1140193..1140597 (-)	405	WP_172040730.1	competence type IV pilus minor pilin ComGD	-
RJW51_RS05725 (RJW51_05710)	comYC	1140581..1140865 (-)	285	WP_172089530.1	competence type IV pilus major pilin ComGC	Machinery gene
RJW51_RS05730 (RJW51_05715)	comYB	1140867..1141904 (-)	1038	WP_172089529.1	competence type IV pilus assembly protein ComGB	Machinery gene
RJW51_RS05735 (RJW51_05720)	comYA	1141816..1142766 (-)	951	WP_172017382.1	competence type IV pilus ATPase ComGA	Machinery gene
RJW51_RS05740 (RJW51_05725)	-	1142854..1143803 (+)	950	Protein_1143	S66 peptidase family protein	-
RJW51_RS05745 (RJW51_05730)	-	1143836..1144204 (-)	369	WP_172055435.1	DUF1033 family protein	-

Sequence

Protein

• Length: 94 a.a.
• Molecular weight: 10764.77 Da
• Isoelectric Point: 5.8786

>NTDB_id=880370 RJW51_RS05725 WP_172089530.1 1140581..1140865(-) (comYC) [Streptococcus parasuis strain 1628469]
MKKILKQKVKGFTLIEMLVVLGIISILLLLFVPNLSKQKQKIQEDGNAAVVKVVESQMDIYELEHGVRPTAEELENLEMI
TEDQLEKYNNVPKK

Nucleotide

• Length: 285 bp

>NTDB_id=880370 RJW51_RS05725 WP_172089530.1 1140581..1140865(-) (comYC) [Streptococcus parasuis strain 1628469]
ATGAAAAAAATATTGAAACAGAAAGTCAAAGGATTCACTTTGATCGAAATGTTAGTGGTGCTTGGAATTATTAGTATTCT
CTTGCTGTTATTTGTGCCAAATCTCAGTAAGCAAAAGCAAAAAATACAAGAAGACGGCAATGCGGCGGTTGTAAAAGTTG
TTGAAAGTCAAATGGACATTTACGAATTGGAGCATGGTGTTCGTCCAACAGCAGAAGAATTAGAAAATTTGGAAATGATA
ACTGAAGATCAACTAGAAAAATATAATAATGTACCTAAAAAATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (7-30)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYC	Streptococcus suis isolate S10	63.441	98.936	0.628
comYC	Streptococcus mutans UA159	56.667	95.745	0.543
comYC	Streptococcus mutans UA140	56.667	95.745	0.543
comGC/cglC	Streptococcus mitis SK321	54.839	98.936	0.543
comGC	Lactococcus lactis subsp. cremoris KW2	55.556	95.745	0.532
comGC/cglC	Streptococcus pneumoniae R6	54.348	97.872	0.532
comGC/cglC	Streptococcus pneumoniae Rx1	54.348	97.872	0.532
comGC/cglC	Streptococcus mitis NCTC 12261	54.348	97.872	0.532
comGC/cglC	Streptococcus pneumoniae TIGR4	54.348	97.872	0.532
comGC/cglC	Streptococcus pneumoniae D39	54.348	97.872	0.532
comYC	Streptococcus gordonii str. Challis substr. CH1	55.056	94.681	0.521
comGC	Staphylococcus aureus MW2	52.055	77.66	0.404
comGC	Staphylococcus aureus N315	52.055	77.66	0.404
comGC	Latilactobacillus sakei subsp. sakei 23K	40.964	88.298	0.362
comGC	Bacillus subtilis subsp. subtilis str. 168	45.333	79.787	0.362