Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYA   Type   Machinery gene
Locus tag   RJW51_RS05735 Genome accession   NZ_CP134491
Coordinates   1141816..1142766 (-) Length   316 a.a.
NCBI ID   WP_172017382.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 1628469     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1136816..1147766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW51_RS05695 (RJW51_05680) - 1136819..1138006 (-) 1188 WP_172040736.1 acetate/propionate family kinase -
  RJW51_RS05700 (RJW51_05685) comYH 1138056..1139009 (-) 954 WP_172071572.1 class I SAM-dependent methyltransferase Machinery gene
  RJW51_RS05705 (RJW51_05690) comGG 1139029..1139529 (-) 501 WP_172089532.1 competence type IV pilus minor pilin ComGG -
  RJW51_RS05710 (RJW51_05695) comYF 1139507..1139941 (-) 435 WP_172089531.1 competence type IV pilus minor pilin ComGF Machinery gene
  RJW51_RS05715 (RJW51_05700) comGE 1139928..1140221 (-) 294 WP_105126461.1 competence type IV pilus minor pilin ComGE -
  RJW51_RS05720 (RJW51_05705) comGD 1140193..1140597 (-) 405 WP_172040730.1 competence type IV pilus minor pilin ComGD -
  RJW51_RS05725 (RJW51_05710) comYC 1140581..1140865 (-) 285 WP_172089530.1 competence type IV pilus major pilin ComGC Machinery gene
  RJW51_RS05730 (RJW51_05715) comYB 1140867..1141904 (-) 1038 WP_172089529.1 competence type IV pilus assembly protein ComGB Machinery gene
  RJW51_RS05735 (RJW51_05720) comYA 1141816..1142766 (-) 951 WP_172017382.1 competence type IV pilus ATPase ComGA Machinery gene
  RJW51_RS05740 (RJW51_05725) - 1142854..1143803 (+) 950 Protein_1143 S66 peptidase family protein -
  RJW51_RS05745 (RJW51_05730) - 1143836..1144204 (-) 369 WP_172055435.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 35456.42 Da        Isoelectric Point: 5.7211

>NTDB_id=880372 RJW51_RS05735 WP_172017382.1 1141816..1142766(-) (comYA) [Streptococcus parasuis strain 1628469]
MIQEKARKMIEEAVAERVSDIYLIPRGENYQVYHRVMDEREYIQELAEDEVMAIISHFKFLAGLNVGEKRRSQQGSCDYN
YGSGEISLRLSTVGDYRGKESLVIRLLYDQDQQLKFWFGALERIAQEIKGRGLYLFSGPVGSGKTTLMYQLARLKFPDKQ
ILTIEDPVEIKQEDMLQLQLNEAIGATYDNLIKLSLRHRPDLLIIGEIRDAETARAVIRASLTGATVFSTVHARSVAGVY
ARMLELGVSPEELNNALQGIAYQRLIGGGGVVDFAKGNYQNHSSDKWNEQIDCLLAAGHISPRQAETEKIVLGSTA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=880372 RJW51_RS05735 WP_172017382.1 1141816..1142766(-) (comYA) [Streptococcus parasuis strain 1628469]
ATGATTCAAGAAAAAGCAAGAAAAATGATTGAAGAGGCAGTTGCCGAAAGGGTCAGTGATATTTATTTGATTCCAAGAGG
AGAAAACTACCAAGTCTATCATCGAGTAATGGATGAACGGGAATATATTCAAGAATTAGCCGAGGATGAGGTGATGGCCA
TTATTAGCCATTTCAAGTTTTTAGCGGGTTTGAATGTCGGTGAAAAACGGCGTAGCCAGCAAGGCTCTTGTGACTACAAT
TATGGTTCAGGGGAGATTTCCCTTCGGTTATCAACGGTTGGTGATTATCGTGGTAAAGAAAGTTTGGTCATTCGTCTGCT
CTATGATCAAGATCAACAACTTAAATTTTGGTTTGGTGCATTGGAGAGAATTGCTCAAGAAATCAAGGGACGAGGGCTCT
ATCTTTTTTCGGGGCCGGTCGGTTCTGGTAAGACCACACTCATGTACCAGCTGGCGAGATTGAAATTTCCAGATAAGCAA
ATTCTAACTATAGAAGATCCAGTGGAGATCAAGCAGGAAGATATGCTCCAACTCCAGCTTAACGAGGCAATTGGTGCCAC
CTATGATAATCTCATCAAACTATCACTTCGTCATCGACCAGATTTACTGATTATTGGAGAAATTCGAGATGCAGAAACTG
CGCGAGCAGTAATACGAGCTAGTTTGACAGGGGCAACGGTCTTCTCAACGGTTCATGCTAGAAGTGTTGCTGGTGTCTAT
GCCCGCATGTTAGAACTGGGTGTAAGTCCTGAAGAATTGAATAATGCTCTTCAAGGAATTGCCTATCAACGACTAATAGG
GGGAGGAGGTGTTGTTGATTTTGCAAAAGGAAACTACCAAAATCATTCCTCGGACAAGTGGAATGAGCAAATTGATTGCC
TTCTTGCAGCAGGACATATCAGTCCTCGGCAGGCAGAAACAGAAAAAATTGTCCTTGGTTCGACAGCGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(8-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYA Streptococcus gordonii str. Challis substr. CH1

68.387

98.101

0.671
  comYA Streptococcus mutans UA159

67.846

98.418

0.668
  comYA Streptococcus mutans UA140

67.846

98.418

0.668
  comGA/cglA/cilD Streptococcus pneumoniae D39

65.806

98.101

0.646
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

65.806

98.101

0.646
  comGA/cglA/cilD Streptococcus pneumoniae R6

65.806

98.101

0.646
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

65.806

98.101

0.646
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

65.484

98.101

0.642
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

64.839

98.101

0.636
  comGA Lactococcus lactis subsp. cremoris KW2

54.89

100

0.551
  comGA Latilactobacillus sakei subsp. sakei 23K

41.877

87.658

0.367