Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   RJW51_RS05700 Genome accession   NZ_CP134491
Coordinates   1138056..1139009 (-) Length   317 a.a.
NCBI ID   WP_172071572.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 1628469     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1133056..1144009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW51_RS05675 (RJW51_05660) - 1133081..1133365 (-) 285 WP_002936537.1 DUF4651 domain-containing protein -
  RJW51_RS05680 (RJW51_05665) pepA 1133578..1134639 (+) 1062 WP_172089533.1 glutamyl aminopeptidase -
  RJW51_RS05685 (RJW51_05670) - 1134685..1135941 (-) 1257 WP_172089630.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  RJW51_RS05690 (RJW51_05675) - 1135996..1136547 (-) 552 WP_024404088.1 folate family ECF transporter S component -
  RJW51_RS05695 (RJW51_05680) - 1136819..1138006 (-) 1188 WP_172040736.1 acetate/propionate family kinase -
  RJW51_RS05700 (RJW51_05685) comYH 1138056..1139009 (-) 954 WP_172071572.1 class I SAM-dependent methyltransferase Machinery gene
  RJW51_RS05705 (RJW51_05690) comGG 1139029..1139529 (-) 501 WP_172089532.1 competence type IV pilus minor pilin ComGG -
  RJW51_RS05710 (RJW51_05695) comYF 1139507..1139941 (-) 435 WP_172089531.1 competence type IV pilus minor pilin ComGF Machinery gene
  RJW51_RS05715 (RJW51_05700) comGE 1139928..1140221 (-) 294 WP_105126461.1 competence type IV pilus minor pilin ComGE -
  RJW51_RS05720 (RJW51_05705) comGD 1140193..1140597 (-) 405 WP_172040730.1 competence type IV pilus minor pilin ComGD -
  RJW51_RS05725 (RJW51_05710) comYC 1140581..1140865 (-) 285 WP_172089530.1 competence type IV pilus major pilin ComGC Machinery gene
  RJW51_RS05730 (RJW51_05715) comYB 1140867..1141904 (-) 1038 WP_172089529.1 competence type IV pilus assembly protein ComGB Machinery gene
  RJW51_RS05735 (RJW51_05720) comYA 1141816..1142766 (-) 951 WP_172017382.1 competence type IV pilus ATPase ComGA Machinery gene
  RJW51_RS05740 (RJW51_05725) - 1142854..1143803 (+) 950 Protein_1143 S66 peptidase family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35653.86 Da        Isoelectric Point: 4.6418

>NTDB_id=880368 RJW51_RS05700 WP_172071572.1 1138056..1139009(-) (comYH) [Streptococcus parasuis strain 1628469]
MKYEKIEQAYNLLLENVQTIQNQLGTNIYDAMIEQNAAYVADQHETELVLNNNKVLRELALTKEEWRRAYQFLLIKANQT
EPMQYNHQFTPDSIGFILSFLVDQLVSTPRVTVLEIGSGTGNLAQTILNASQKELDYLGIEIDDLLIDLSASIADVMGAA
ISFAQGDAVRPQILKESQVILGDLPIGYYPDDQIASRYQVASPNEHTYAHHLLMEQSLKYLEKDGFAILLAPNDLLTSPQ
SNLLKGWLQEQANVVAMIALPPNLFGKAAMAKSIFVLQKKAARPLTPFVYPLQSLQEPEAIQKFMVNFKNWKQENAI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=880368 RJW51_RS05700 WP_172071572.1 1138056..1139009(-) (comYH) [Streptococcus parasuis strain 1628469]
ATGAAATATGAAAAAATTGAACAGGCCTACAACCTGCTTTTAGAAAATGTACAGACGATTCAAAATCAACTTGGGACCAA
TATTTATGATGCTATGATTGAGCAAAATGCTGCCTATGTAGCTGATCAACATGAAACTGAACTTGTTCTCAACAACAATA
AAGTCTTGAGAGAATTAGCCTTGACAAAGGAAGAATGGCGTCGTGCTTACCAATTCTTGCTCATTAAAGCTAACCAGACA
GAACCGATGCAGTACAACCATCAGTTCACACCTGATTCTATCGGATTTATCTTATCTTTCCTTGTGGACCAGTTGGTCTC
TACTCCAAGAGTAACGGTTTTGGAAATTGGTTCTGGTACAGGAAACTTAGCTCAGACCATTCTCAACGCTAGCCAAAAGG
AATTAGACTATTTAGGGATTGAAATAGATGACCTCTTGATTGATTTATCAGCTAGTATCGCGGATGTCATGGGAGCAGCT
ATTTCATTTGCTCAGGGAGATGCGGTACGTCCGCAGATTTTGAAAGAAAGCCAAGTGATTTTGGGAGATTTGCCTATCGG
CTACTATCCAGATGACCAGATTGCTAGCCGTTATCAGGTAGCCAGTCCAAATGAACATACCTACGCCCATCATTTGCTCA
TGGAACAGTCCCTCAAATATCTAGAAAAAGATGGATTTGCGATTTTACTGGCTCCAAATGATTTATTAACGAGTCCGCAA
AGCAATTTATTAAAAGGCTGGTTACAAGAACAAGCCAATGTTGTTGCCATGATTGCCCTGCCACCAAATCTTTTTGGGAA
GGCTGCCATGGCCAAGTCCATTTTTGTGTTACAAAAGAAAGCTGCCAGACCTTTAACTCCTTTCGTTTATCCTTTGCAAA
GCCTGCAAGAACCAGAAGCGATTCAGAAGTTCATGGTCAATTTCAAAAATTGGAAGCAAGAGAATGCAATTTAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(68-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

59.494

99.685

0.593
  comYH Streptococcus mutans UA159

59.177

99.685

0.59