Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   RJW51_RS05730 Genome accession   NZ_CP134491
Coordinates   1140867..1141904 (-) Length   345 a.a.
NCBI ID   WP_172089529.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 1628469     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1135867..1146904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW51_RS05690 (RJW51_05675) - 1135996..1136547 (-) 552 WP_024404088.1 folate family ECF transporter S component -
  RJW51_RS05695 (RJW51_05680) - 1136819..1138006 (-) 1188 WP_172040736.1 acetate/propionate family kinase -
  RJW51_RS05700 (RJW51_05685) comYH 1138056..1139009 (-) 954 WP_172071572.1 class I SAM-dependent methyltransferase Machinery gene
  RJW51_RS05705 (RJW51_05690) comGG 1139029..1139529 (-) 501 WP_172089532.1 competence type IV pilus minor pilin ComGG -
  RJW51_RS05710 (RJW51_05695) comYF 1139507..1139941 (-) 435 WP_172089531.1 competence type IV pilus minor pilin ComGF Machinery gene
  RJW51_RS05715 (RJW51_05700) comGE 1139928..1140221 (-) 294 WP_105126461.1 competence type IV pilus minor pilin ComGE -
  RJW51_RS05720 (RJW51_05705) comGD 1140193..1140597 (-) 405 WP_172040730.1 competence type IV pilus minor pilin ComGD -
  RJW51_RS05725 (RJW51_05710) comYC 1140581..1140865 (-) 285 WP_172089530.1 competence type IV pilus major pilin ComGC Machinery gene
  RJW51_RS05730 (RJW51_05715) comYB 1140867..1141904 (-) 1038 WP_172089529.1 competence type IV pilus assembly protein ComGB Machinery gene
  RJW51_RS05735 (RJW51_05720) comYA 1141816..1142766 (-) 951 WP_172017382.1 competence type IV pilus ATPase ComGA Machinery gene
  RJW51_RS05740 (RJW51_05725) - 1142854..1143803 (+) 950 Protein_1143 S66 peptidase family protein -
  RJW51_RS05745 (RJW51_05730) - 1143836..1144204 (-) 369 WP_172055435.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 39199.21 Da        Isoelectric Point: 9.2926

>NTDB_id=880371 RJW51_RS05730 WP_172089529.1 1140867..1141904(-) (comYB) [Streptococcus parasuis strain 1628469]
MSKLIAFLQQDISVLGRQKQKKLSLVRQRKVIELFNNLFASGFHLGEIVDFLKRSQLLADQYTQVLSDGLLAGKPFSSLL
GDLRFSDAVVTQVALAEVHGNTSLSLGHIQSYLENVSKVRKKLIEVATYPIILLAFLLLIMLGLKNYLLPQLEEGNVATI
LIQHLPTIFLSFCGLFFLAVLGGLIWYRRTNKIKAFSRLVALPFFGKLIQTYLTAYYAREWGSLIGQGLDMPQIVGLMQE
QKSQLFREIGEDLERSLSDGHSFHAHIQTYGFFKRELSLMIEYGQVKSKLGSELSVYATECWEEFFSRVNRAMQLIQPLV
FLFVALMVVLIYAAMLLPIYQNMEL

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=880371 RJW51_RS05730 WP_172089529.1 1140867..1141904(-) (comYB) [Streptococcus parasuis strain 1628469]
ATGAGCAAATTGATTGCCTTCTTGCAGCAGGACATATCAGTCCTCGGCAGGCAGAAACAGAAAAAATTGTCCTTGGTTCG
ACAGCGTAAGGTGATTGAGCTTTTTAACAATCTTTTTGCTAGTGGATTTCACTTGGGGGAAATTGTCGATTTTCTCAAAC
GGAGTCAACTCTTGGCTGACCAATACACGCAAGTTTTGTCCGATGGTCTTCTTGCAGGAAAGCCATTTTCAAGTCTTTTA
GGAGATTTACGCTTTTCGGATGCGGTTGTCACCCAGGTGGCCTTGGCGGAGGTTCATGGCAATACCAGTCTGAGTCTAGG
TCATATTCAATCTTATCTTGAAAATGTTAGCAAGGTGCGTAAAAAATTGATAGAAGTAGCAACCTATCCAATCATCTTGC
TTGCCTTTTTATTATTGATAATGTTGGGACTAAAAAACTATTTGTTGCCCCAGTTGGAAGAAGGAAATGTTGCGACTATA
TTGATTCAACACTTGCCAACAATCTTTTTATCCTTTTGTGGCCTTTTCTTTCTTGCTGTCTTAGGTGGGCTTATTTGGTA
TCGCAGAACAAATAAAATCAAGGCTTTTTCTCGCTTAGTAGCTCTGCCATTTTTCGGAAAACTCATCCAAACCTATTTGA
CCGCCTATTACGCGAGGGAATGGGGAAGCTTGATTGGTCAGGGACTTGATATGCCTCAGATTGTGGGCTTGATGCAGGAA
CAAAAATCACAGCTTTTTCGTGAGATTGGTGAAGATTTAGAGCGTTCGCTTTCTGATGGGCATAGTTTCCATGCTCATAT
CCAAACGTATGGCTTTTTCAAACGGGAGCTGAGTCTAATGATTGAGTATGGGCAAGTCAAATCAAAATTAGGAAGTGAGT
TATCTGTGTATGCAACAGAGTGTTGGGAGGAATTTTTTTCTCGTGTTAATAGGGCCATGCAGTTGATTCAACCATTGGTT
TTTCTCTTTGTGGCCTTAATGGTCGTTCTCATCTACGCAGCCATGTTGCTGCCTATTTATCAGAATATGGAGTTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(218-338)

Type II secretion system (T2SS), protein F (T2SSF)

(33-150)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus gordonii str. Challis substr. CH1

60.819

99.13

0.603
  comYB Streptococcus mutans UA140

60.117

98.841

0.594
  comYB Streptococcus mutans UA159

60.117

98.841

0.594
  comGB/cglB Streptococcus mitis SK321

60

97.101

0.583
  comGB/cglB Streptococcus mitis NCTC 12261

59.701

97.101

0.58
  comGB/cglB Streptococcus pneumoniae Rx1

59.104

97.101

0.574
  comGB/cglB Streptococcus pneumoniae D39

59.104

97.101

0.574
  comGB/cglB Streptococcus pneumoniae R6

59.104

97.101

0.574
  comGB/cglB Streptococcus pneumoniae TIGR4

59.104

97.101

0.574
  comGB Lactococcus lactis subsp. cremoris KW2

51.632

97.681

0.504