Detailed information NTG0880369

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: RJW51_RS05710
• Genome accession: NZ_CP134491
• Coordinates: 1139507..1139941 (-)
• Length: 144 a.a.
• NCBI ID: WP_172089531.1
• Uniprot ID: -
• Organism: Streptococcus parasuis strain 1628469
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1134507..1144941

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RJW51_RS05685 (RJW51_05670)	-	1134685..1135941 (-)	1257	WP_172089630.1	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	-
RJW51_RS05690 (RJW51_05675)	-	1135996..1136547 (-)	552	WP_024404088.1	folate family ECF transporter S component	-
RJW51_RS05695 (RJW51_05680)	-	1136819..1138006 (-)	1188	WP_172040736.1	acetate/propionate family kinase	-
RJW51_RS05700 (RJW51_05685)	comYH	1138056..1139009 (-)	954	WP_172071572.1	class I SAM-dependent methyltransferase	Machinery gene
RJW51_RS05705 (RJW51_05690)	comGG	1139029..1139529 (-)	501	WP_172089532.1	competence type IV pilus minor pilin ComGG	-
RJW51_RS05710 (RJW51_05695)	comYF	1139507..1139941 (-)	435	WP_172089531.1	competence type IV pilus minor pilin ComGF	Machinery gene
RJW51_RS05715 (RJW51_05700)	comGE	1139928..1140221 (-)	294	WP_105126461.1	competence type IV pilus minor pilin ComGE	-
RJW51_RS05720 (RJW51_05705)	comGD	1140193..1140597 (-)	405	WP_172040730.1	competence type IV pilus minor pilin ComGD	-
RJW51_RS05725 (RJW51_05710)	comYC	1140581..1140865 (-)	285	WP_172089530.1	competence type IV pilus major pilin ComGC	Machinery gene
RJW51_RS05730 (RJW51_05715)	comYB	1140867..1141904 (-)	1038	WP_172089529.1	competence type IV pilus assembly protein ComGB	Machinery gene
RJW51_RS05735 (RJW51_05720)	comYA	1141816..1142766 (-)	951	WP_172017382.1	competence type IV pilus ATPase ComGA	Machinery gene
RJW51_RS05740 (RJW51_05725)	-	1142854..1143803 (+)	950	Protein_1143	S66 peptidase family protein	-
RJW51_RS05745 (RJW51_05730)	-	1143836..1144204 (-)	369	WP_172055435.1	DUF1033 family protein	-

Sequence

Protein

• Length: 144 a.a.
• Molecular weight: 16367.72 Da
• Isoelectric Point: 6.4707

>NTDB_id=880369 RJW51_RS05710 WP_172089531.1 1139507..1139941(-) (comYF) [Streptococcus parasuis strain 1628469]
MRKTKLAGFTLLECLIALLIISGSLLVIEGLSKLIAHEVRYQESHVEKQWLLFCDQLRAEWEGASLDRVDSGKLYLTKGE
KSLAFGKSVADDFRKTNANGQGYQPMLYKVYSATYAQQGEVIQLDVTFESGEERSFRYVFEKTN

Nucleotide

• Length: 435 bp

>NTDB_id=880369 RJW51_RS05710 WP_172089531.1 1139507..1139941(-) (comYF) [Streptococcus parasuis strain 1628469]
TTGAGAAAAACTAAGTTAGCTGGGTTCACCCTCTTGGAATGTTTAATTGCCTTACTCATTATTTCTGGCAGCTTGCTAGT
GATTGAAGGATTATCAAAATTGATAGCGCATGAGGTTCGCTATCAAGAGAGTCATGTGGAAAAACAGTGGTTACTATTTT
GTGATCAATTGCGGGCTGAATGGGAAGGAGCAAGCCTTGATCGGGTTGATTCTGGAAAGTTGTACCTAACCAAAGGGGAA
AAATCATTGGCATTTGGCAAGTCTGTGGCAGATGATTTTCGCAAGACAAATGCAAATGGTCAGGGCTATCAGCCCATGTT
GTACAAAGTTTATTCAGCTACTTACGCCCAACAAGGCGAGGTTATACAGCTGGATGTAACATTTGAAAGTGGGGAGGAAA
GGAGTTTTAGGTATGTTTTTGAAAAAACGAATTAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (39-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA159	53.472	100	0.535
comYF	Streptococcus mutans UA140	53.472	100	0.535
comGF	Lactococcus lactis subsp. cremoris KW2	47.518	97.917	0.465
comGF/cglF	Streptococcus mitis NCTC 12261	46.429	97.222	0.451
comGF/cglF	Streptococcus pneumoniae Rx1	44.928	95.833	0.431
comGF/cglF	Streptococcus pneumoniae D39	44.928	95.833	0.431
comGF/cglF	Streptococcus pneumoniae R6	44.928	95.833	0.431
comGF/cglF	Streptococcus pneumoniae TIGR4	44.928	95.833	0.431
comGF/cglF	Streptococcus mitis SK321	43.571	97.222	0.424