Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   RDJ20_RS26140 Genome accession   NZ_CP133755
Coordinates   5454932..5455387 (-) Length   151 a.a.
NCBI ID   WP_033976389.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain BJ86     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5449932..5460387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDJ20_RS26120 (RDJ20_26120) ampD 5450638..5451204 (-) 567 WP_039028111.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  RDJ20_RS26125 (RDJ20_26125) - 5451354..5453609 (-) 2256 WP_033976391.1 DUF1631 domain-containing protein -
  RDJ20_RS26130 (RDJ20_26130) nadC 5453895..5454743 (+) 849 WP_033976390.1 carboxylating nicotinate-nucleotide diphosphorylase -
  RDJ20_RS26140 (RDJ20_26140) pilA 5454932..5455387 (-) 456 WP_033976389.1 pilin Machinery gene
  RDJ20_RS26145 (RDJ20_26145) pilB 5455619..5457319 (+) 1701 WP_033976388.1 type IV-A pilus assembly ATPase PilB Machinery gene
  RDJ20_RS26150 (RDJ20_26150) pilC 5457323..5458543 (+) 1221 WP_033976387.1 type 4a pilus biogenesis protein PilC Machinery gene
  RDJ20_RS26155 (RDJ20_26155) pilD 5458547..5459419 (+) 873 WP_033976386.1 type IV prepilin peptidase/methyltransferase PilD Machinery gene
  RDJ20_RS26160 (RDJ20_26160) coaE 5459416..5460027 (+) 612 WP_033970460.1 dephospho-CoA kinase -
  RDJ20_RS26165 (RDJ20_26165) yacG 5460024..5460224 (+) 201 WP_003094656.1 DNA gyrase inhibitor YacG -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 15862.20 Da        Isoelectric Point: 7.7840

>NTDB_id=876344 RDJ20_RS26140 WP_033976389.1 5454932..5455387(-) (pilA) [Pseudomonas aeruginosa strain BJ86]
MKAQKGFTLIELMIVVAIIGILAAIAIPQYQNYVARSEGASALASINPLKTTVEEALSRGWSVRSGTGAEDAAKKEVPLG
VDGKANNLGTIALNPDPANGAADITLTFTMDAAGPKNKDKVITLTRTATDGLWKCTSDQEKQFIPKGCSDK

Nucleotide


Download         Length: 456 bp        

>NTDB_id=876344 RDJ20_RS26140 WP_033976389.1 5454932..5455387(-) (pilA) [Pseudomonas aeruginosa strain BJ86]
ATGAAAGCTCAAAAAGGCTTTACCTTGATCGAACTGATGATCGTGGTTGCGATCATCGGTATCCTGGCGGCAATTGCCAT
TCCCCAATACCAGAACTATGTTGCGCGCTCGGAAGGCGCTTCGGCGCTGGCGTCCATCAACCCGTTGAAGACAACTGTAG
AAGAGGCTCTTTCTCGTGGTTGGAGCGTTAGGAGTGGTACTGGTGCAGAAGACGCTGCTAAAAAAGAAGTTCCGCTGGGT
GTAGATGGAAAGGCCAATAATCTCGGCACCATTGCTCTGAACCCTGATCCTGCAAATGGTGCTGCTGATATTACTCTGAC
CTTCACCATGGATGCTGCTGGTCCGAAGAACAAAGACAAAGTCATTACTCTGACTCGTACTGCTACTGATGGCCTTTGGA
AGTGCACCAGTGATCAGGAAAAGCAGTTCATTCCGAAAGGCTGCTCTGACAAGTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(35-148)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Pseudomonas aeruginosa PAK

87.919

98.675

0.868
  pilA Acinetobacter baumannii strain A118

44.371

100

0.444
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

44

99.338

0.437
  pilA Vibrio cholerae strain A1552

44

99.338

0.437
  pilA Vibrio cholerae C6706

44

99.338

0.437
  pilA/pilAI Pseudomonas stutzeri DSM 10701

43.421

100

0.437
  pilA/pilAII Pseudomonas stutzeri DSM 10701

45.205

96.689

0.437
  pilA Vibrio parahaemolyticus RIMD 2210633

47.761

88.742

0.424
  comP Acinetobacter baylyi ADP1

41.333

99.338

0.411
  pilA2 Legionella pneumophila str. Paris

40.136

97.351

0.391
  pilA2 Legionella pneumophila strain ERS1305867

39.456

97.351

0.384
  pilA/pilA1 Eikenella corrodens VA1

36.25

100

0.384
  pilA Acinetobacter nosocomialis M2

46.61

78.146

0.364