Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   WGQ49_RS03120 Genome accession   NZ_CP149886
Coordinates   597596..597979 (+) Length   127 a.a.
NCBI ID   WP_002858579.1    Uniprot ID   -
Organism   Campylobacter jejuni strain NPRC(S) 01.13897     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 592596..602979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WGQ49_RS03100 (WGQ49_03100) - 592675..594609 (-) 1935 WP_182101490.1 ribonuclease R family protein -
  WGQ49_RS03105 (WGQ49_03105) ilvC 594728..595750 (+) 1023 WP_032581040.1 ketol-acid reductoisomerase -
  WGQ49_RS03110 (WGQ49_03110) - 595754..596836 (+) 1083 WP_032581039.1 divergent polysaccharide deacetylase family protein -
  WGQ49_RS03115 (WGQ49_03115) dprA 596826..597599 (+) 774 WP_052774570.1 DNA-processing protein DprA Machinery gene
  WGQ49_RS03120 (WGQ49_03120) dprB 597596..597979 (+) 384 WP_002858579.1 Holliday junction resolvase RuvX Machinery gene
  WGQ49_RS03125 (WGQ49_03125) - 598008..598847 (+) 840 WP_010891872.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  WGQ49_RS03130 (WGQ49_03130) msrA 599023..599520 (-) 498 WP_002890709.1 peptide-methionine (S)-S-oxide reductase MsrA -
  WGQ49_RS03135 (WGQ49_03135) ppa 599561..600079 (-) 519 WP_002867724.1 inorganic diphosphatase -
  WGQ49_RS03140 (WGQ49_03140) adk 600089..600667 (-) 579 WP_002859580.1 adenylate kinase -
  WGQ49_RS03145 (WGQ49_03145) aspS 600664..602415 (-) 1752 WP_002890710.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14064.61 Da        Isoelectric Point: 9.5430

>NTDB_id=876347 WGQ49_RS03120 WP_002858579.1 597596..597979(+) (dprB) [Campylobacter jejuni strain NPRC(S) 01.13897]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKILEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=876347 WGQ49_RS03120 WP_002858579.1 597596..597979(+) (dprB) [Campylobacter jejuni strain NPRC(S) 01.13897]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATTGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACTTGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449