Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | RDJ20_RS26155 | Genome accession | NZ_CP133755 |
| Coordinates | 5458547..5459419 (+) | Length | 290 a.a. |
| NCBI ID | WP_033976386.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain BJ86 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5453547..5464419
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RDJ20_RS26130 (RDJ20_26130) | nadC | 5453895..5454743 (+) | 849 | WP_033976390.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| RDJ20_RS26140 (RDJ20_26140) | pilA | 5454932..5455387 (-) | 456 | WP_033976389.1 | pilin | Machinery gene |
| RDJ20_RS26145 (RDJ20_26145) | pilB | 5455619..5457319 (+) | 1701 | WP_033976388.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| RDJ20_RS26150 (RDJ20_26150) | pilC | 5457323..5458543 (+) | 1221 | WP_033976387.1 | type 4a pilus biogenesis protein PilC | Machinery gene |
| RDJ20_RS26155 (RDJ20_26155) | pilD | 5458547..5459419 (+) | 873 | WP_033976386.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| RDJ20_RS26160 (RDJ20_26160) | coaE | 5459416..5460027 (+) | 612 | WP_033970460.1 | dephospho-CoA kinase | - |
| RDJ20_RS26165 (RDJ20_26165) | yacG | 5460024..5460224 (+) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
| RDJ20_RS26170 (RDJ20_26170) | - | 5460261..5460470 (-) | 210 | WP_003094660.1 | hypothetical protein | - |
| RDJ20_RS26175 (RDJ20_26175) | - | 5460576..5461265 (-) | 690 | WP_003103868.1 | energy-coupling factor ABC transporter permease | - |
| RDJ20_RS26180 (RDJ20_26180) | - | 5461262..5461732 (-) | 471 | WP_033970459.1 | hypothetical protein | - |
| RDJ20_RS26185 (RDJ20_26185) | - | 5461729..5462154 (-) | 426 | WP_033976385.1 | GNAT family N-acetyltransferase | - |
| RDJ20_RS26190 (RDJ20_26190) | - | 5462287..5462916 (+) | 630 | WP_003094668.1 | DUF1780 domain-containing protein | - |
| RDJ20_RS26195 (RDJ20_26195) | - | 5462913..5463361 (+) | 449 | Protein_5185 | MOSC domain-containing protein | - |
| RDJ20_RS26200 (RDJ20_26200) | - | 5463387..5463557 (+) | 171 | WP_003094672.1 | DUF3094 family protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31825.86 Da Isoelectric Point: 7.7068
>NTDB_id=876347 RDJ20_RS26155 WP_033976386.1 5458547..5459419(+) (pilD) [Pseudomonas aeruginosa strain BJ86]
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLVANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLVANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=876347 RDJ20_RS26155 WP_033976386.1 5458547..5459419(+) (pilD) [Pseudomonas aeruginosa strain BJ86]
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTTCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAACCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAGCG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGGTCGCCAATCATTTCGGTCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCATTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTTCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAACCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAGCG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGGTCGCCAATCATTTCGGTCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCATTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55.714 |
96.552 |
0.538 |
| pilD | Vibrio campbellii strain DS40M4 |
53.004 |
97.586 |
0.517 |
| pilD | Acinetobacter nosocomialis M2 |
50.53 |
97.586 |
0.493 |
| pilD | Acinetobacter baumannii D1279779 |
50.53 |
97.586 |
0.493 |
| pilD | Neisseria gonorrhoeae MS11 |
48.921 |
95.862 |
0.469 |