Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   WGQ49_RS03115 Genome accession   NZ_CP149886
Coordinates   596826..597599 (+) Length   257 a.a.
NCBI ID   WP_052774570.1    Uniprot ID   -
Organism   Campylobacter jejuni strain NPRC(S) 01.13897     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 591826..602599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WGQ49_RS03100 (WGQ49_03100) - 592675..594609 (-) 1935 WP_182101490.1 ribonuclease R family protein -
  WGQ49_RS03105 (WGQ49_03105) ilvC 594728..595750 (+) 1023 WP_032581040.1 ketol-acid reductoisomerase -
  WGQ49_RS03110 (WGQ49_03110) - 595754..596836 (+) 1083 WP_032581039.1 divergent polysaccharide deacetylase family protein -
  WGQ49_RS03115 (WGQ49_03115) dprA 596826..597599 (+) 774 WP_052774570.1 DNA-processing protein DprA Machinery gene
  WGQ49_RS03120 (WGQ49_03120) dprB 597596..597979 (+) 384 WP_002858579.1 Holliday junction resolvase RuvX Machinery gene
  WGQ49_RS03125 (WGQ49_03125) - 598008..598847 (+) 840 WP_010891872.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  WGQ49_RS03130 (WGQ49_03130) msrA 599023..599520 (-) 498 WP_002890709.1 peptide-methionine (S)-S-oxide reductase MsrA -
  WGQ49_RS03135 (WGQ49_03135) ppa 599561..600079 (-) 519 WP_002867724.1 inorganic diphosphatase -
  WGQ49_RS03140 (WGQ49_03140) adk 600089..600667 (-) 579 WP_002859580.1 adenylate kinase -
  WGQ49_RS03145 (WGQ49_03145) aspS 600664..602415 (-) 1752 WP_002890710.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28776.55 Da        Isoelectric Point: 7.0848

>NTDB_id=876346 WGQ49_RS03115 WP_052774570.1 596826..597599(+) (dprA) [Campylobacter jejuni strain NPRC(S) 01.13897]
MASEILPDEFLELFQDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLGESTGTNFLLKENKAKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=876346 WGQ49_RS03115 WP_052774570.1 596826..597599(+) (dprA) [Campylobacter jejuni strain NPRC(S) 01.13897]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAGCTTTTTCAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGCGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGATTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAGAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCACAAAGACTAGGAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAATTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.444

100

0.984
  dprA Helicobacter pylori 26695

49.167

93.385

0.459