Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   Q5384_RS20045 Genome accession   NZ_CP133410
Coordinates   4200785..4201810 (-) Length   341 a.a.
NCBI ID   WP_223398757.1    Uniprot ID   -
Organism   Enterobacter ludwigii strain AG32E     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4195785..4206810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5384_RS20015 (Q5384_20015) - 4196686..4197183 (+) 498 WP_032670169.1 SprT family zinc-dependent metalloprotease -
  Q5384_RS20020 (Q5384_20020) endA 4197278..4197985 (+) 708 WP_044858001.1 deoxyribonuclease I -
  Q5384_RS20025 (Q5384_20025) rsmE 4198038..4198769 (+) 732 WP_020883697.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  Q5384_RS20030 (Q5384_20030) gshB 4198809..4199756 (+) 948 WP_020883696.1 glutathione synthase -
  Q5384_RS20035 (Q5384_20035) - 4199843..4200403 (+) 561 WP_020883695.1 YqgE/AlgH family protein -
  Q5384_RS20040 (Q5384_20040) ruvX 4200403..4200819 (+) 417 WP_014171567.1 Holliday junction resolvase RuvX -
  Q5384_RS20045 (Q5384_20045) pilT 4200785..4201810 (-) 1026 WP_223398757.1 type IV pilus twitching motility protein PilT Machinery gene
  Q5384_RS20050 (Q5384_20050) - 4201828..4202529 (+) 702 WP_044865459.1 YggS family pyridoxal phosphate-dependent enzyme -
  Q5384_RS20055 (Q5384_20055) - 4202551..4203117 (+) 567 WP_014171570.1 YggT family protein -
  Q5384_RS20060 (Q5384_20060) yggU 4203114..4203410 (+) 297 WP_014885193.1 DUF167 family protein YggU -
  Q5384_RS20065 (Q5384_20065) - 4203414..4204007 (+) 594 WP_138614615.1 XTP/dITP diphosphatase -
  Q5384_RS20070 (Q5384_20070) hemW 4204000..4205142 (+) 1143 WP_014171573.1 radical SAM family heme chaperone HemW -
  Q5384_RS20075 (Q5384_20075) - 4205206..4205568 (+) 363 WP_032678948.1 DUF559 domain-containing protein -
  Q5384_RS20080 (Q5384_20080) - 4205630..4206346 (-) 717 WP_040018846.1 DUF2884 domain-containing protein -
  Q5384_RS20085 (Q5384_20085) - 4206403..4206729 (-) 327 WP_020883688.1 YggL family protein -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37105.11 Da        Isoelectric Point: 5.8611

>NTDB_id=873824 Q5384_RS20045 WP_223398757.1 4200785..4201810(-) (pilT) [Enterobacter ludwigii strain AG32E]
MDVEEIVALSVKHNVSDLHLCSDSPPRWRRTGRLEPAPFPPPEVDTLLKAWLNDEQQGTWWANGQVDFAVTLAGNQRLRG
SAFKQTSGVSMTLRLLPGVCPQLSALGVPQVVPELLSSDNGLILVTGATGSGKSTTLAAMVDFLNHHTDGHILTLEDPVE
FLYQSERCLIQQREIGQHSPSFADALRGALRQDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAIERLVDT
FPAQEKDPVRNQLAGSLRAVLAQKLLPDAQGGRVALYELLVNTPAAANLIREGKTWQLPGIIQTGQQAGMQNFDQSLAER
RAQGQLQAPALNNPVRNSFRE

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=873824 Q5384_RS20045 WP_223398757.1 4200785..4201810(-) (pilT) [Enterobacter ludwigii strain AG32E]
ATGGATGTGGAAGAAATTGTGGCCCTTAGTGTAAAGCATAATGTCTCCGATCTACACCTGTGCAGTGATTCGCCACCGCG
CTGGCGCAGAACAGGTCGTCTTGAACCCGCGCCGTTTCCGCCTCCCGAAGTCGATACGCTATTAAAGGCGTGGCTCAACG
ATGAACAGCAGGGAACGTGGTGGGCGAACGGGCAGGTGGATTTTGCCGTCACCCTGGCGGGCAATCAGCGCCTGCGCGGA
AGCGCGTTTAAACAGACAAGCGGCGTCTCAATGACGCTGCGGCTGTTGCCCGGAGTCTGCCCGCAACTCTCCGCGTTGGG
GGTGCCCCAGGTTGTTCCTGAGCTGTTATCCAGTGACAACGGGCTAATTCTGGTCACCGGGGCAACCGGCAGCGGTAAGT
CCACTACGCTGGCAGCGATGGTGGATTTTCTTAATCACCATACTGACGGGCATATTCTGACGCTCGAAGACCCGGTGGAG
TTTCTGTACCAGAGCGAACGGTGCCTGATCCAGCAGCGCGAGATTGGCCAACACAGCCCGTCATTTGCCGACGCGCTGCG
CGGGGCGTTACGCCAGGATCCTGATGTCATACTGCTGGGTGAGCTGCGCGACAGTGAAACAATCCGCCTCGCGCTGACGG
CGGCAGAAACCGGACATCTGGTGCTCGCGACACTGCATACCCGCGGGGCAGCGCAGGCGATTGAGCGGCTGGTCGATACG
TTTCCGGCGCAGGAGAAAGATCCGGTGCGCAATCAGCTGGCCGGCAGCCTGCGGGCGGTGCTGGCGCAAAAGCTCCTCCC
GGATGCGCAGGGCGGGCGCGTGGCGCTTTATGAGCTGCTGGTGAATACTCCGGCGGCGGCGAATCTCATTCGCGAAGGAA
AAACGTGGCAATTGCCCGGTATTATTCAAACCGGCCAGCAGGCGGGGATGCAGAACTTTGACCAGAGCCTGGCTGAAAGA
CGGGCGCAGGGGCAACTCCAGGCCCCGGCGCTCAATAACCCTGTTCGAAATAGCTTTCGAGAATGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(110-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae strain A1552

49.112

99.12

0.487
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

49.112

99.12

0.487
  pilT Neisseria meningitidis 8013

48.348

97.654

0.472
  pilT Neisseria gonorrhoeae MS11

46.784

100

0.469
  pilT Legionella pneumophila strain ERS1305867

49.068

94.428

0.463
  pilT Legionella pneumophila strain Lp02

49.068

94.428

0.463
  pilT Acinetobacter baylyi ADP1

46.988

97.361

0.457
  pilT Pseudomonas stutzeri DSM 10701

47.706

95.894

0.457
  pilT Acinetobacter baumannii D1279779

47.706

95.894

0.457
  pilT Acinetobacter baumannii strain A118

47.706

95.894

0.457
  pilT Pseudomonas aeruginosa PAK

47.401

95.894

0.455
  pilT Acinetobacter nosocomialis M2

48.125

93.842

0.452
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.72

94.428

0.422
  pilU Pseudomonas stutzeri DSM 10701

40.303

96.774

0.39
  pilU Vibrio cholerae strain A1552

39.441

94.428

0.372