Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   RDI40_RS12920 Genome accession   NZ_CP133409
Coordinates   2628431..2629411 (-) Length   326 a.a.
NCBI ID   WP_032676501.1    Uniprot ID   A0A9Q2WBJ7
Organism   Enterobacter hormaechei strain LE43E     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2623431..2634411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDI40_RS12890 (RDI40_12890) - 2624309..2624805 (+) 497 Protein_2453 SprT family zinc-dependent metalloprotease -
  RDI40_RS12895 (RDI40_12895) endA 2624900..2625607 (+) 708 WP_023306912.1 deoxyribonuclease I -
  RDI40_RS12900 (RDI40_12900) rsmE 2625659..2626390 (+) 732 WP_003860033.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  RDI40_RS12905 (RDI40_12905) gshB 2626422..2627369 (+) 948 WP_003860032.1 glutathione synthase -
  RDI40_RS12910 (RDI40_12910) - 2627444..2628004 (+) 561 WP_022649353.1 YqgE/AlgH family protein -
  RDI40_RS12915 (RDI40_12915) ruvX 2628004..2628420 (+) 417 WP_006811925.1 Holliday junction resolvase RuvX -
  RDI40_RS12920 (RDI40_12920) pilT 2628431..2629411 (-) 981 WP_032676501.1 type IV pilus twitching motility protein PilT Machinery gene
  RDI40_RS12925 (RDI40_12925) - 2629429..2630130 (+) 702 WP_023298569.1 YggS family pyridoxal phosphate-dependent enzyme -
  RDI40_RS12930 (RDI40_12930) - 2630152..2630718 (+) 567 WP_003860024.1 YggT family protein -
  RDI40_RS12935 (RDI40_12935) yggU 2630715..2631011 (+) 297 WP_023304404.1 DUF167 family protein YggU -
  RDI40_RS12940 (RDI40_12940) - 2631015..2631608 (+) 594 WP_010435473.1 XTP/dITP diphosphatase -
  RDI40_RS12945 (RDI40_12945) hemW 2631601..2632749 (+) 1149 WP_038416710.1 radical SAM family heme chaperone HemW -
  RDI40_RS12950 (RDI40_12950) - 2632806..2633144 (+) 339 WP_324285988.1 endonuclease domain-containing protein -
  RDI40_RS12955 (RDI40_12955) - 2633228..2633944 (-) 717 WP_324285989.1 DUF2884 domain-containing protein -
  RDI40_RS12960 (RDI40_12960) - 2634002..2634328 (-) 327 WP_003862421.1 YggL family protein -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 35673.66 Da        Isoelectric Point: 6.6603

>NTDB_id=873793 RDI40_RS12920 WP_032676501.1 2628431..2629411(-) (pilT) [Enterobacter hormaechei strain LE43E]
MDVEEIVALSVKHNVSDLHLCSDSPPRWRRSGRLEPAPFPPPDVEALLKAWLNDEQQGAWWANGQVDFAVTLTGGQRLRG
SAFKHMHGVSIALRLLPLTCPQLSALGVPRAIPELLSNDNGLILVTGATGSGKSTTLAAMVDFLNHHTDGHILTLEDPVE
FMYQSQRCLIRQREIGQHSPSFAEALRSALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAIERLVDT
FPAQEKDPVRNQLAGSLRAVLAQKLRQDVQGGRVALYELLVNTSAAANLIREGKTWQLPGIIQTGQQAGMQNFEQSLAER
RAQGRL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=873793 RDI40_RS12920 WP_032676501.1 2628431..2629411(-) (pilT) [Enterobacter hormaechei strain LE43E]
ATGGATGTGGAAGAAATTGTGGCCCTTAGTGTAAAGCATAACGTCTCCGATCTACACCTGTGCAGTGATTCACCACCGCG
CTGGCGCAGGTCAGGCCGTCTTGAACCTGCGCCGTTTCCGCCCCCCGATGTGGAGGCGTTATTAAAAGCGTGGCTCAACG
ACGAGCAGCAGGGTGCCTGGTGGGCAAACGGGCAGGTAGATTTTGCCGTTACCCTCACAGGCGGTCAGCGGCTGCGCGGC
AGTGCGTTTAAGCATATGCACGGCGTTTCGATCGCGCTACGCCTGTTGCCGCTGACGTGTCCGCAGCTCTCTGCGTTAGG
CGTGCCGCGCGCGATCCCGGAGCTTTTGTCCAATGACAATGGCCTGATTCTGGTCACCGGCGCCACCGGCAGCGGGAAAT
CGACCACCCTGGCCGCGATGGTCGATTTTCTCAATCACCATACGGACGGGCACATTCTGACCCTGGAAGATCCGGTGGAG
TTTATGTACCAGAGTCAACGTTGCCTCATCCGGCAGCGGGAGATAGGCCAGCATAGCCCGTCCTTTGCCGAGGCCCTGCG
CAGTGCGCTGCGTGAAGATCCGGATGTGATTCTGCTTGGTGAGCTGCGCGACAGCGAGACGATACGCCTGGCGTTGACGG
CGGCTGAGACTGGCCATCTGGTGTTGGCCACGCTGCACACGCGCGGTGCGGCGCAGGCGATCGAGCGACTGGTCGATACC
TTCCCGGCGCAGGAGAAAGATCCGGTTCGTAATCAGCTGGCGGGAAGCCTGCGTGCGGTACTGGCGCAGAAGCTGCGTCA
GGATGTCCAGGGCGGGCGCGTGGCGCTGTATGAGCTACTGGTGAATACGTCGGCGGCGGCAAACCTGATCCGCGAAGGCA
AAACCTGGCAACTGCCGGGCATTATTCAAACGGGGCAGCAGGCGGGGATGCAGAACTTTGAGCAGAGTCTGGCGGAGCGA
CGGGCGCAGGGGCGGCTGTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(75-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

50.765

100

0.509
  pilT Vibrio cholerae strain A1552

50.765

100

0.509
  pilT Pseudomonas stutzeri DSM 10701

48.012

100

0.482
  pilT Neisseria meningitidis 8013

47.561

100

0.479
  pilT Legionella pneumophila strain ERS1305867

48.447

98.773

0.479
  pilT Legionella pneumophila strain Lp02

48.447

98.773

0.479
  pilT Neisseria gonorrhoeae MS11

47.256

100

0.475
  pilT Acinetobacter baumannii strain A118

47.095

100

0.472
  pilT Acinetobacter baylyi ADP1

47.095

100

0.472
  pilT Acinetobacter baumannii D1279779

47.095

100

0.472
  pilT Pseudomonas aeruginosa PAK

47.095

100

0.472
  pilT Acinetobacter nosocomialis M2

47.5

98.16

0.466
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.344

99.08

0.429
  pilU Pseudomonas stutzeri DSM 10701

38.485

100

0.39
  pilU Vibrio cholerae strain A1552

38.509

98.773

0.38