Detailed information NTG0862163

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: Q6H54_RS22435
• Genome accession: NZ_CP130917
• Coordinates: 4408638..4409438 (+)
• Length: 266 a.a.
• NCBI ID: WP_004191960.1
• Uniprot ID: A0AAJ5B1F9
• Organism: Klebsiella pneumoniae strain 2023CK-00047
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4403638..4414438

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q6H54_RS22400 (Q6H54_22395)	gspH	4403794..4404309 (+)	516	WP_032422016.1	type II secretion system minor pseudopilin GspH	-
Q6H54_RS22405 (Q6H54_22400)	gspI	4404306..4404671 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
Q6H54_RS22410 (Q6H54_22405)	gspJ	4404668..4405264 (+)	597	WP_032433846.1	type II secretion system minor pseudopilin GspJ	-
Q6H54_RS22415 (Q6H54_22410)	gspK	4405261..4406247 (+)	987	WP_077255453.1	type II secretion system minor pseudopilin GspK	-
Q6H54_RS22420 (Q6H54_22415)	gspL	4406234..4407427 (+)	1194	WP_032416685.1	type II secretion system protein GspL	-
Q6H54_RS22425 (Q6H54_22420)	-	4407420..4407905 (+)	486	WP_004145896.1	type II secretion system protein M	-
Q6H54_RS22430 (Q6H54_22425)	-	4407895..4408641 (+)	747	WP_004145897.1	type II secretion system protein N	-
Q6H54_RS22435 (Q6H54_22430)	pilD	4408638..4409438 (+)	801	WP_004191960.1	A24 family peptidase	Machinery gene
Q6H54_RS22440 (Q6H54_22435)	hrpB	4409486..4411915 (-)	2430	WP_032433845.1	ATP-dependent helicase HrpB	-
Q6H54_RS22445 (Q6H54_22440)	thpR	4411988..4412524 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
Q6H54_RS22450 (Q6H54_22445)	sfsA	4412524..4413240 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
Q6H54_RS22455 (Q6H54_22450)	dksA	4413403..4413858 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29403.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=862163 Q6H54_RS22435 WP_004191960.1 4408638..4409438(+) (pilD) [Klebsiella pneumoniae strain 2023CK-00047]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMI

Nucleotide

• Length: 801 bp

>NTDB_id=862163 Q6H54_RS22435 WP_004191960.1 4408638..4409438(+) (pilD) [Klebsiella pneumoniae strain 2023CK-00047]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGATCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGATCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.057	99.624	0.489
pilD	Vibrio campbellii strain DS40M4	46.545	100	0.481
pilD	Acinetobacter nosocomialis M2	46.388	98.872	0.459
pilD	Acinetobacter baumannii D1279779	45.627	98.872	0.451
pilD	Neisseria gonorrhoeae MS11	43.922	95.865	0.421