Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   QYC30_RS11025 Genome accession   NZ_CP130347
Coordinates   2239916..2241013 (+) Length   365 a.a.
NCBI ID   WP_206201317.1    Uniprot ID   -
Organism   Thermosynechococcus sp. JY1339     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2234916..2246013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYC30_RS11005 (QYC30_11005) - 2235629..2237155 (-) 1527 WP_302676615.1 right-handed parallel beta-helix repeat-containing protein -
  QYC30_RS11010 (QYC30_11010) - 2237152..2237349 (-) 198 WP_206201320.1 lipopolysaccharide assembly protein LapA domain-containing protein -
  QYC30_RS11015 (QYC30_11015) - 2237350..2237562 (-) 213 WP_206201319.1 hypothetical protein -
  QYC30_RS11020 (QYC30_11020) pilB/pilB1 2237824..2239848 (+) 2025 WP_302676616.1 GspE/PulE family protein Machinery gene
  QYC30_RS11025 (QYC30_11025) pilT 2239916..2241013 (+) 1098 WP_206201317.1 type IV pilus twitching motility protein PilT Machinery gene
  QYC30_RS11030 (QYC30_11030) - 2241050..2242270 (+) 1221 WP_206201316.1 type II secretion system F family protein -
  QYC30_RS11035 (QYC30_11035) - 2242279..2242752 (+) 474 WP_206201315.1 J domain-containing protein -
  QYC30_RS11040 (QYC30_11040) - 2242749..2243021 (+) 273 WP_302676617.1 DUF3143 domain-containing protein -
  QYC30_RS11045 (QYC30_11045) - 2243018..2243371 (-) 354 WP_206201314.1 hypothetical protein -
  QYC30_RS11050 (QYC30_11050) - 2243921..2244725 (+) 805 Protein_2182 IS630 family transposase -
  QYC30_RS13285 - 2245006..2245176 (+) 171 Protein_2183 hypothetical protein -
  QYC30_RS11055 (QYC30_11055) mreD 2245222..2245749 (-) 528 WP_302676618.1 rod shape-determining protein MreD -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 40352.41 Da        Isoelectric Point: 6.7579

>NTDB_id=858107 QYC30_RS11025 WP_206201317.1 2239916..2241013(+) (pilT) [Thermosynechococcus sp. JY1339]
MELMIEDLMEQVVANGGSDLHISAGLPPYIRISGKLTPTDYEPLTPEQCQRLIFSMLNNTQRKHLEQNWELDCSYGVRGL
ARFRVNVYKDRGTYAACLRALSSKIPTFEQLGLPNVVREMSERPRGLILVTGPTGSGKTTTLAAMIDLINKTRAEHILTI
EDPIEFVYEPIKSLIHQRQVGEDTKSFANALRAALREDPDIILVGEMRDLETIQLAISAAETGHLVFGTLHTSSAAQTVD
RMVDVFPPEQQQQIRVQLSNSLVAVFSQTLVPKKNPKPGEFGRIMAQEIMVVTPAISNLIREGKTSQIYSAIQTGGKLGM
QTLEKVLADYYRAGIITYEAAMAKSSRQDELQRLIGTGTPAAAAR

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=858107 QYC30_RS11025 WP_206201317.1 2239916..2241013(+) (pilT) [Thermosynechococcus sp. JY1339]
ATGGAGCTAATGATTGAAGACCTAATGGAGCAAGTGGTGGCCAATGGTGGCTCCGATTTGCATATCTCCGCTGGCTTACC
CCCCTACATTCGCATTAGCGGCAAATTAACCCCGACGGACTACGAACCCCTCACCCCAGAGCAGTGCCAGCGCCTGATCT
TCAGCATGCTCAACAATACCCAACGCAAGCACCTAGAGCAAAACTGGGAGTTGGACTGCTCCTATGGTGTACGTGGCCTC
GCCCGGTTCCGCGTCAATGTGTATAAAGACCGGGGAACCTATGCTGCTTGCTTGCGAGCACTCAGTTCCAAAATTCCCAC
GTTTGAGCAGTTGGGATTGCCCAATGTTGTCCGCGAAATGAGTGAGCGGCCACGGGGCTTGATTCTGGTGACCGGTCCAA
CAGGATCAGGGAAAACCACAACCTTGGCGGCGATGATTGACTTGATCAACAAAACCCGCGCTGAGCATATCCTGACGATT
GAAGACCCCATTGAGTTTGTCTATGAACCCATCAAGAGCCTGATCCACCAACGGCAGGTGGGGGAAGATACCAAGAGCTT
TGCCAATGCTCTGCGGGCAGCGCTGCGGGAAGACCCCGATATTATCCTTGTGGGTGAGATGCGGGACTTGGAAACAATTC
AGCTTGCCATCTCAGCGGCAGAAACCGGTCACTTGGTCTTTGGTACCTTGCACACCAGTTCAGCTGCCCAAACCGTTGAC
CGTATGGTGGATGTGTTCCCGCCAGAGCAGCAGCAGCAAATTCGCGTCCAGTTGTCCAACTCGTTAGTGGCGGTCTTTAG
CCAAACGCTGGTTCCTAAGAAAAATCCCAAGCCCGGTGAATTTGGGCGGATTATGGCACAAGAGATCATGGTGGTGACCC
CTGCTATCTCCAACCTGATTCGCGAAGGCAAGACCTCGCAGATTTATTCGGCAATTCAAACGGGCGGCAAGCTGGGGATG
CAGACCCTTGAAAAAGTCTTGGCCGATTATTATCGTGCAGGCATCATCACCTATGAAGCAGCAATGGCCAAGTCCTCGCG
TCAGGACGAGTTGCAACGTCTGATTGGTACGGGTACACCTGCGGCAGCAGCACGCTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(36-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Pseudomonas aeruginosa PAK

55.718

93.425

0.521
  pilT Legionella pneumophila strain ERS1305867

53.913

94.521

0.51
  pilT Legionella pneumophila strain Lp02

53.913

94.521

0.51
  pilT Pseudomonas stutzeri DSM 10701

54.227

93.973

0.51
  pilT Acinetobacter baylyi ADP1

54.277

92.877

0.504
  pilT Acinetobacter baumannii strain A118

53.116

92.329

0.49
  pilT Acinetobacter nosocomialis M2

53.116

92.329

0.49
  pilT Acinetobacter baumannii D1279779

53.116

92.329

0.49
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.286

95.89

0.482
  pilT Neisseria gonorrhoeae MS11

48.997

95.616

0.468
  pilT Neisseria meningitidis 8013

48.997

95.616

0.468
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

49.706

93.151

0.463
  pilT Vibrio cholerae strain A1552

49.706

93.151

0.463
  pilU Pseudomonas stutzeri DSM 10701

39.437

97.26

0.384
  pilU Acinetobacter baylyi ADP1

37.822

95.616

0.362