Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   QY056_RS13315 Genome accession   NZ_CP129636
Coordinates   2764886..2765866 (+) Length   326 a.a.
NCBI ID   WP_023314823.1    Uniprot ID   -
Organism   Enterobacter hormaechei subsp. xiangfangensis strain Eh8322_LBHALD     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2759886..2770866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY056_RS13275 (QY056_13275) - 2759916..2760242 (+) 327 WP_003862421.1 YggL family protein -
  QY056_RS13280 (QY056_13280) - 2760300..2761016 (+) 717 WP_003862419.1 DUF2884 domain-containing protein -
  QY056_RS13285 (QY056_13285) - 2761129..2761491 (-) 363 WP_022651832.1 DUF559 domain-containing protein -
  QY056_RS13290 (QY056_13290) hemW 2761548..2762696 (-) 1149 WP_023323732.1 radical SAM family heme chaperone HemW -
  QY056_RS13295 (QY056_13295) - 2762689..2763282 (-) 594 WP_022651831.1 XTP/dITP diphosphatase -
  QY056_RS13300 (QY056_13300) yggU 2763286..2763582 (-) 297 WP_003860023.1 DUF167 family protein YggU -
  QY056_RS13305 (QY056_13305) - 2763579..2764145 (-) 567 WP_032660290.1 YggT family protein -
  QY056_RS13310 (QY056_13310) - 2764170..2764868 (-) 699 WP_023314824.1 YggS family pyridoxal phosphate-dependent enzyme -
  QY056_RS13315 (QY056_13315) pilT 2764886..2765866 (+) 981 WP_023314823.1 type IV pilus twitching motility protein PilT Machinery gene
  QY056_RS13320 (QY056_13320) ruvX 2765877..2766293 (-) 417 WP_003860030.1 Holliday junction resolvase RuvX -
  QY056_RS13325 (QY056_13325) - 2766293..2766853 (-) 561 WP_022649353.1 YqgE/AlgH family protein -
  QY056_RS13330 (QY056_13330) gshB 2766928..2767875 (-) 948 WP_003860032.1 glutathione synthase -
  QY056_RS13335 (QY056_13335) rsmE 2767903..2768634 (-) 732 WP_023314822.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  QY056_RS13340 (QY056_13340) endA 2768686..2769393 (-) 708 WP_003860034.1 deoxyribonuclease I -
  QY056_RS13345 (QY056_13345) - 2769488..2769985 (-) 498 WP_023314821.1 SprT family zinc-dependent metalloprotease -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 35608.58 Da        Isoelectric Point: 6.2335

>NTDB_id=854708 QY056_RS13315 WP_023314823.1 2764886..2765866(+) (pilT) [Enterobacter hormaechei subsp. xiangfangensis strain Eh8322_LBHALD]
MDVEEIVALSVKHNVSDLHLCSDSPPRWRRSGRLEPAPFPPPDVEALLKAWLNDEQQGAWWANGQVDFAVTLTGGQRLRG
SAFKHMHGVSIALRLLPLTCPQLSALGVPRAIPELLSNDNGLILVTGATGSGKSTTLAAMVDFLNHQTDGHILTLEDPVE
FMYQSERCLIQQREIGLHSPSFAEALRSALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAIERLVDT
FPAQEKDPVRNQLAGSLRAVLAQKLRQDVQGGRVALYELLVNTSAAANLIREGKTWQLPGIIQTGQQAGMQNFEQSLAER
RAQGRV

Nucleotide


Download         Length: 981 bp        

>NTDB_id=854708 QY056_RS13315 WP_023314823.1 2764886..2765866(+) (pilT) [Enterobacter hormaechei subsp. xiangfangensis strain Eh8322_LBHALD]
ATGGATGTGGAAGAAATTGTGGCCCTTAGTGTAAAGCATAACGTCTCCGATCTACACCTGTGCAGTGATTCACCACCGCG
CTGGCGCAGGTCAGGCCGTCTTGAACCTGCGCCGTTTCCGCCCCCGGATGTGGAGGCATTATTAAAAGCGTGGCTCAATG
ACGAACAGCAGGGCGCCTGGTGGGCAAACGGGCAGGTGGATTTTGCCGTTACCCTCACAGGCGGTCAGCGGCTGCGCGGC
AGTGCGTTTAAGCATATGCACGGCGTTTCGATCGCGCTGCGCCTGTTGCCGCTGACGTGCCCGCAGCTCTCTGCGTTAGG
CGTGCCGCGCGCGATCCCGGAGCTTTTGTCCAATGACAATGGCCTGATTCTGGTCACCGGCGCCACCGGCAGCGGGAAAT
CGACCACTCTGGCCGCGATGGTCGATTTCCTCAATCACCAGACGGACGGGCATATTCTGACCCTGGAAGATCCGGTGGAG
TTTATGTACCAGAGTGAACGTTGCCTGATCCAGCAGCGGGAGATAGGCCTGCACAGCCCGTCCTTTGCCGAGGCCCTGCG
CAGCGCTCTGCGTGAAGATCCGGATGTGATTCTGCTTGGTGAGCTGCGCGACAGCGAGACGATACGCCTGGCGCTGACGG
CGGCGGAAACCGGCCATCTGGTGTTGGCCACGCTGCACACGCGCGGTGCGGCGCAGGCGATCGAGCGCCTGGTCGACACC
TTTCCGGCGCAGGAGAAAGATCCGGTGCGTAATCAACTGGCGGGAAGCCTGCGTGCGGTTCTGGCGCAGAAGCTGCGTCA
GGATGTCCAGGGCGGGCGCGTGGCGCTGTATGAGCTACTGGTGAATACGTCGGCGGCGGCAAACCTGATCCGCGAAGGCA
AAACCTGGCAACTGCCGGGCATTATTCAAACGGGGCAGCAGGCGGGGATGCAGAACTTTGAGCAGAGTCTGGCGGAGCGA
CGGGCGCAGGGGCGGGTGTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(75-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae strain A1552

50.456

100

0.509
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

50.456

100

0.509
  pilT Pseudomonas stutzeri DSM 10701

47.72

100

0.482
  pilT Legionella pneumophila strain Lp02

48.447

98.773

0.479
  pilT Legionella pneumophila strain ERS1305867

48.447

98.773

0.479
  pilT Neisseria meningitidis 8013

46.97

100

0.475
  pilT Acinetobacter baumannii D1279779

46.809

100

0.472
  pilT Acinetobacter baumannii strain A118

46.809

100

0.472
  pilT Pseudomonas aeruginosa PAK

46.809

100

0.472
  pilT Neisseria gonorrhoeae MS11

46.667

100

0.472
  pilT Acinetobacter baylyi ADP1

46.789

100

0.469
  pilT Acinetobacter nosocomialis M2

47.5

98.16

0.466
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.344

99.08

0.429
  pilU Pseudomonas stutzeri DSM 10701

38.182

100

0.387
  pilU Vibrio cholerae strain A1552

38.509

98.773

0.38