Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   NSY31_RS11810 Genome accession   NZ_CP127834
Coordinates   2452360..2452695 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain Ag109     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2447360..2457695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSY31_RS11790 (NSY31_11790) gcvT 2447966..2449066 (-) 1101 WP_015388009.1 glycine cleavage system aminomethyltransferase GcvT -
  NSY31_RS11795 (NSY31_11795) - 2449490..2451160 (+) 1671 WP_025284995.1 SNF2-related protein -
  NSY31_RS11800 (NSY31_11800) - 2451182..2451976 (+) 795 WP_098081582.1 YqhG family protein -
  NSY31_RS11805 (NSY31_11805) sinI 2452153..2452326 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  NSY31_RS11810 (NSY31_11810) sinR 2452360..2452695 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  NSY31_RS11815 (NSY31_11815) - 2452743..2453528 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  NSY31_RS11820 (NSY31_11820) - 2453593..2454177 (-) 585 WP_015240205.1 signal peptidase I SipW -
  NSY31_RS11825 (NSY31_11825) tapA 2454149..2454820 (-) 672 WP_063094776.1 amyloid fiber anchoring/assembly protein TapA -
  NSY31_RS11830 (NSY31_11830) - 2455079..2455408 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  NSY31_RS11835 (NSY31_11835) - 2455448..2455627 (-) 180 WP_003153093.1 YqzE family protein -
  NSY31_RS11840 (NSY31_11840) comGG 2455684..2456061 (-) 378 WP_012117980.1 competence type IV pilus minor pilin ComGG Machinery gene
  NSY31_RS11845 (NSY31_11845) comGF 2456062..2456562 (-) 501 WP_254895460.1 competence type IV pilus minor pilin ComGF -
  NSY31_RS11850 (NSY31_11850) comGE 2456471..2456785 (-) 315 WP_080130386.1 competence type IV pilus minor pilin ComGE Machinery gene
  NSY31_RS11855 (NSY31_11855) comGD 2456769..2457206 (-) 438 WP_012117983.1 competence type IV pilus minor pilin ComGD Machinery gene
  NSY31_RS11860 (NSY31_11860) comGC 2457196..2457504 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=844530 NSY31_RS11810 WP_003153104.1 2452360..2452695(+) (sinR) [Bacillus velezensis strain Ag109]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=844530 NSY31_RS11810 WP_003153104.1 2452360..2452695(+) (sinR) [Bacillus velezensis strain Ag109]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991