Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   P1N06_RS17885 Genome accession   NZ_CP121297
Coordinates   3668049..3669029 (-) Length   326 a.a.
NCBI ID   WP_001055651.1    Uniprot ID   -
Organism   Salmonella enterica subsp. enterica strain KKP 1762     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3663049..3674029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P1N06_RS17855 (P1N06_17855) endA 3663507..3664214 (+) 708 WP_000286124.1 deoxyribonuclease I -
  P1N06_RS17860 (P1N06_17860) rsmE 3664291..3665022 (+) 732 WP_001800534.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  P1N06_RS17865 (P1N06_17865) gshB 3665042..3665989 (+) 948 WP_076737398.1 glutathione synthase -
  P1N06_RS17870 (P1N06_17870) - 3666205..3666768 (+) 564 WP_001053171.1 YqgE/AlgH family protein -
  P1N06_RS17875 (P1N06_17875) ruvX 3666768..3667184 (+) 417 WP_001285491.1 Holliday junction resolvase RuvX -
  P1N06_RS17880 (P1N06_17880) - 3667231..3667917 (-) 687 WP_000098325.1 IclR family transcriptional regulator -
  P1N06_RS17885 (P1N06_17885) pilT 3668049..3669029 (-) 981 WP_001055651.1 type IV pilus twitching motility protein PilT Machinery gene
  P1N06_RS17890 (P1N06_17890) - 3669047..3669751 (+) 705 WP_000997790.1 YggS family pyridoxal phosphate-dependent enzyme -
  P1N06_RS17895 (P1N06_17895) - 3669770..3670336 (+) 567 WP_001094848.1 YggT family protein -
  P1N06_RS17900 (P1N06_17900) yggU 3670333..3670623 (+) 291 WP_001277203.1 DUF167 family protein YggU -
  P1N06_RS17905 (P1N06_17905) - 3670631..3671224 (+) 594 WP_001174769.1 XTP/dITP diphosphatase -
  P1N06_RS17910 (P1N06_17910) hemW 3671217..3672353 (+) 1137 WP_001096530.1 radical SAM family heme chaperone HemW -
  P1N06_RS17915 (P1N06_17915) - 3672445..3673452 (-) 1008 WP_076737399.1 DUF1202 family protein -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 36166.42 Da        Isoelectric Point: 8.1066

>NTDB_id=811696 P1N06_RS17885 WP_001055651.1 3668049..3669029(-) (pilT) [Salmonella enterica subsp. enterica strain KKP 1762]
MNMEEIVTLSVKHNVSDLHLCNAWPARWRKQGRMETAPFTAPDVDRLLLDWLNDAQQYQWRKHGQLDFAVSLSGTRRLRA
SAFKHQQGTSLALRLLPERCPDLAEIQTPPIVPALLASENGLILVTGATGCGKSTTLAAMVGHLNQHADKHILTLEDPIE
YRYTSKRCLIQQREIGQHCATFAAGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAVERLVDS
FPAQEKEPVRSQLAGSLRAVLSQKLEVDRQDGRVALFELLINTPATGNLIREGKLHQLAHVIQTGQQQGMMTFAQSAQWR
QAQGRL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=811696 P1N06_RS17885 WP_001055651.1 3668049..3669029(-) (pilT) [Salmonella enterica subsp. enterica strain KKP 1762]
ATGAATATGGAAGAAATTGTGACGCTTAGTGTAAAGCATAACGTCTCGGATCTACACCTGTGTAACGCATGGCCTGCGCG
ATGGCGCAAACAAGGACGCATGGAGACCGCGCCTTTTACCGCGCCTGATGTCGACAGGCTTCTGCTTGATTGGCTTAATG
ACGCGCAACAATATCAGTGGCGAAAGCACGGCCAGCTTGATTTCGCCGTCTCGCTGTCTGGCACGCGGCGCTTGCGCGCC
AGTGCGTTCAAACATCAACAGGGAACGTCGCTGGCGCTACGGCTATTGCCCGAGCGTTGTCCTGATCTGGCGGAAATCCA
GACGCCGCCGATAGTACCCGCACTGCTTGCCAGCGAGAACGGACTGATTCTGGTCACTGGCGCCACTGGCTGCGGGAAAT
CCACTACGCTGGCGGCGATGGTGGGACATCTTAATCAACATGCCGATAAACACATCCTGACGCTGGAAGATCCTATTGAG
TACCGTTACACCAGCAAGCGTTGCCTGATACAGCAGCGGGAAATCGGCCAGCATTGCGCCACTTTTGCCGCCGGGCTGCG
CGCGGCGTTGCGTGAAGATCCCGATGTCATTTTACTGGGAGAGCTGCGTGACAGCGAGACCATTCGCCTGGCGCTGACGG
CGGCGGAAACGGGGCATCTGGTACTGGCAACCCTGCATACTCGTGGCGCGGCGCAGGCGGTGGAAAGATTAGTGGATAGT
TTTCCGGCGCAGGAAAAAGAACCGGTACGCAGTCAACTGGCGGGTAGTCTGCGCGCTGTACTATCGCAAAAACTGGAGGT
CGACAGACAAGATGGGCGCGTGGCGTTGTTTGAATTACTGATTAATACGCCAGCCACAGGGAATTTGATCCGTGAAGGCA
AACTCCATCAGTTGGCCCACGTGATACAAACCGGGCAGCAGCAGGGGATGATGACATTCGCCCAGAGCGCGCAATGGCGT
CAGGCGCAGGGACGACTGTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(77-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae strain A1552

48.624

100

0.488
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

48.624

100

0.488
  pilT Neisseria meningitidis 8013

47.256

100

0.475
  pilT Neisseria gonorrhoeae MS11

46.951

100

0.472
  pilT Acinetobacter baylyi ADP1

45.26

100

0.454
  pilT Acinetobacter baumannii strain A118

44.954

100

0.451
  pilT Acinetobacter baumannii D1279779

44.954

100

0.451
  pilT Pseudomonas aeruginosa PAK

44.954

100

0.451
  pilT Pseudomonas stutzeri DSM 10701

44.954

100

0.451
  pilT Acinetobacter nosocomialis M2

44.648

100

0.448
  pilT Legionella pneumophila strain Lp02

44.654

97.546

0.436
  pilT Legionella pneumophila strain ERS1305867

44.654

97.546

0.436
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.138

97.546

0.411
  pilU Vibrio cholerae strain A1552

38.558

97.853

0.377
  pilU Pseudomonas stutzeri DSM 10701

35.65

100

0.362